Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3459g00001 ATGGCGGTTTCTTCTTCTTCTTCTGCAAAATGGGTCCTCAATGCTTGCTTCTTTTTGCTTCTGGTGCTTCTCATTGGAGAAGCCACGGCCAATCCAAAGATCCCTCAGCTCAGGAATGTTGAAGTTGAAGCAAACAAGTTGAAGAGCTTGAACAACTCATCAATGGCGGCGAGGGCAAAAGAAGCTATGAAATTAAATGAGCATGCTGCAGTGGCTAACCCAGAGGAGGTGGCTTCAATGGTAGAGATGAGGATCCAGAATAGCACAGAAAGAAGGAAACTGGGATTCTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAATTGGCAACGTAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGTAGAAATGCCATTGGTGGTCGTGATGGCAAGTTCTATGTGGTCACTGACCCCAGAGATGATGACCCTGTTAACCCCAAACCTGGCACATTGCGCTATGCTGTGATTCAGGATACACCTCTCTGGATTGTGTTCCAAAGGGACATGGTTATACAGTTGAAGCAGGAGCTCATTATGAACAGCTTCAAGACCATTGATGGGAGAGGAGCTAATGTCCACATTGCTAATGGAGCATGCATCACTATCCAGTATATTACCAATGTCATCATTCATGGCCTTCACATCCATGACTGCATACCCACTGGAAATGCCATGGTGAGGAGCTCCCCGTCACACTTTGGATGGAGGACAATGGCTGATGGAGATGGCGTCTCCATATTTGGCTCAAGTCACATTTGGGTGGATCATAACTCTTTGTCCCATTGTGCTGATGGCCTTGTGGATGCTATCATGGGCTCAACAGCTATAACAATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCAGATGCAAGTGACCATCGCATACAACCATTTTGGCGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAATCGATACAGTGCTCCTGCTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCTGAAACCGAGTGGAAGGGTTGGAATTGGAGATCAGAGGGAGATTTATTGGTGAATGGTGCTTACTTCACCCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAATCTTCTTCCATGGTTGGTTCCATGACTTCTAATGCTGGTGCACTTGGTTGCCGCAGAGGCCGTCAGTGCTAG 1356 0.4779 MAVSSSSSAKWVLNACFFLLLVLLIGEATANPKIPQLRNVEVEANKLKSLNNSSMAARAKEAMKLNEHAAVANPEEVASMVEMRIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRYAVIQDTPLWIVFQRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCIPTGNAMVRSSPSHFGWRTMADGDGVSIFGSSHIWVDHNSLSHCADGLVDAIMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYSAPANPFAKEVTKRVETAETEWKGWNWRSEGDLLVNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCRRGRQC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3459g00001 451 Pfam Pectate lyase 184 366 IPR002022 -
Gabi3459g00001 451 Gene3D - 102 444 IPR012334 -
Gabi3459g00001 451 SUPERFAMILY Pectin lyase-like 79 445 IPR011050 -
Gabi3459g00001 451 SMART amb_all 177 374 IPR002022 -
Gabi3459g00001 451 FunFam Pectate lyase 102 444 - -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Gabi3459g00001 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Gabi3459g00001 451 PANTHER PECTATE LYASE 18-RELATED 67 449 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3459g00001 Gabi-Chr3459 40790 45583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3459g00001 31 451 Polysaccharide Lyase AT4G13710 79.343 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3459g00001 K01728 - gmx:100808253 827.009