Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3457g00006 ATGGCTATTGCAGCCCCAGGGCAACTCAACGTGAATGAATCCCCCACTTGGGGATCCAGAAGTGTTGATTGCTTCGAAAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTACATGGCTAAAGAGAACAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAAAAACTACACCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGACCTGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTCCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATTAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGAACACAATGCAAATCTTACAAATCGTGTCATTACATTATGGTACAGACCCCCTGAGTTGCTGCTAGGGACAACAAAGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATCTTTGCTGAGCTTCTTCATGGGAAGCCGATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATTTGAGCTGTGTGGAGCACCAGATGAAGTGAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCAACAAGGCCAATGAAAAGACGTCTGAGGGAAGTTTTCAGGCATTTTGATCGTCATGCTCTGGAATTGTTGGAGAGGATGCTGACACTTGATCCAGCTCAGGTATCATTTCTTCACTTGTGGGTCTGA 960 0.4198 MAIAAPGQLNVNESPTWGSRSVDCFEKLEQIGEGTYGQVYMAKENKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPAQVSFLHLWV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3457g00006 319 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Gabi3457g00006 319 SMART serkin_6 25 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3457g00006 319 FunFam Cyclin-dependent kinase C-2 122 314 - -
Gabi3457g00006 319 ProSiteProfiles Protein kinase domain profile. 25 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3457g00006 319 Pfam Protein kinase domain 25 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3457g00006 319 FunFam Cyclin-dependent kinase C-2 12 121 - -
Gabi3457g00006 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Gabi3457g00006 319 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Gabi3457g00006 319 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Gabi3457g00006 319 Gene3D Transferase(Phosphotransferase) domain 1 122 312 - -
Gabi3457g00006 319 CDD STKc_CDK9_like 25 311 - -
Gabi3457g00006 319 PANTHER CELL DIVISION PROTEIN KINASE 23 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3457g00006 Gabi-Chr3457 46769 50134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3457g00006 1 311 Core Cell Cycle Gene Families AT5G10270 86.859 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi3457g00006 Pkinase 3.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3457g00006 K08819 - gmx:100793565 634.024