LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3457g00006	ATGGCTATTGCAGCCCCAGGGCAACTCAACGTGAATGAATCCCCCACTTGGGGATCCAGAAGTGTTGATTGCTTCGAAAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTACATGGCTAAAGAGAACAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAAAAACTACACCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGACCTGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTCCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATTAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGAACACAATGCAAATCTTACAAATCGTGTCATTACATTATGGTACAGACCCCCTGAGTTGCTGCTAGGGACAACAAAGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATCTTTGCTGAGCTTCTTCATGGGAAGCCGATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATTTGAGCTGTGTGGAGCACCAGATGAAGTGAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCAACAAGGCCAATGAAAAGACGTCTGAGGGAAGTTTTCAGGCATTTTGATCGTCATGCTCTGGAATTGTTGGAGAGGATGCTGACACTTGATCCAGCTCAGGTATCATTTCTTCACTTGTGGGTCTGA	960	0.4198	MAIAAPGQLNVNESPTWGSRSVDCFEKLEQIGEGTYGQVYMAKENKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPAQVSFLHLWV	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3457g00006	319	SUPERFAMILY	Protein kinase-like (PK-like)	18	310	IPR011009	-
	Gabi3457g00006	319	SMART	serkin_6	25	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3457g00006	319	FunFam	Cyclin-dependent kinase C-2	122	314	-	-
	Gabi3457g00006	319	ProSiteProfiles	Protein kinase domain profile.	25	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3457g00006	319	Pfam	Protein kinase domain	25	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3457g00006	319	FunFam	Cyclin-dependent kinase C-2	12	121	-	-
	Gabi3457g00006	319	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	159	171	IPR008271	GO:0004672\|GO:0006468
	Gabi3457g00006	319	ProSitePatterns	Protein kinases ATP-binding region signature.	31	54	IPR017441	GO:0005524
	Gabi3457g00006	319	Gene3D	Phosphorylase Kinase; domain 1	12	121	-	-
	Gabi3457g00006	319	Gene3D	Transferase(Phosphotransferase) domain 1	122	312	-	-
	Gabi3457g00006	319	CDD	STKc_CDK9_like	25	311	-	-
	Gabi3457g00006	319	PANTHER	CELL DIVISION PROTEIN KINASE	23	311	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3457g00006	Gabi-Chr3457	46769	50134	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3457g00006	1	311	Core Cell Cycle Gene Families	AT5G10270	86.859	0.0	569

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Gabi3457g00006		Pkinase	3.3e-70	CL0016