Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3457g00002 ATGTTTTCAGTTTTTAGCCCTTGTAGCGATCTATTGCATGTCAAAGGCGCAGTGTTTCTTATGGGCACAGTGTTTGTGATGACATTATTATCAAATGAAAAAGGTAATGGCGGGGATGAGTTAGAAGAAAAAGATAATTTAAAGAAAGGGCCATGGACAGCAGAAGAGGATAAAATTTTGAAGGAATATGTGAAAAACCATGGAGAGGGGAATTGGAATGCAGTTCAAAAGAAATCAGGACTTGCTCGTTGTGGAAAAAGCTGCCGTTTTCGATGGACAAATCACTTGAGACCAGATTTGAAGAAGGGTCCCATGAGTAAAGAGGAAGAGCTTAAGATCATTGAACTCCATGCTGATATGGGGCCCAAATGGGCTAAAATGGCTTTGGAGTTGCCTGGACGTACTGACAATGAGATAAAGAACTATTGGAACACAAGAAAAAAGAAACTTGAACGAGCTGGCGCACCAATGTACCCTCCTAACATACACCCACGTGTGCTTAATGCCACTCAACAAAGTCTAAAGGGTTCCAGCAGCCACCAACAAGCAGATAAATTTGCTATAATAAACAACAACCTCAGTCAAGAACTTCCACCATATGTATCACCAATCAATTATATATATGAAAGCAACACATTTGAACAAGGTCCAAGCTCATCATCACATTTGTACAGCACTAATATTGTTGCCCCAGTATTAGTTGATTATGAGCAATATGCAGGTTTAAATGGCACTTCCTACATAGCTGAGGCCATGGTATCAGACCTACCTCCACTTCCATGCAGGCCTGCATCTCCTATTCTTCCATCAGTAGTTGATGGGTCTCTCAGTAGACTGATTCAGGATCCAGATTCAATAACTCCCACCATATATGGGGAAATGACTCAGATAGAACCAGTTTCTCCACGCAGCAATGGTTATTTGGAATCGATACTCTACCCTCCAAAGATTTTGGAAGGCTCGGGTAATAAGAAGAATTCATCTCATCCCTATGAGAAAGAATTGGATGAGCAAGGGAAACATTCGAACCCCAAAGAAATTACAAGTCTGGATGATTTAGCTGATTTTGTTTGGTTAGAGAATGAAGCAGTGAGTGACAAGGATCAATCTCCTCCTGATGATGATTTCTTCTCATTTTTTGGTACAGATTTCAATGGTTTATTATAG 1167 0.4036 MFSVFSPCSDLLHVKGAVFLMGTVFVMTLLSNEKGNGGDELEEKDNLKKGPWTAEEDKILKEYVKNHGEGNWNAVQKKSGLARCGKSCRFRWTNHLRPDLKKGPMSKEEELKIIELHADMGPKWAKMALELPGRTDNEIKNYWNTRKKKLERAGAPMYPPNIHPRVLNATQQSLKGSSSHQQADKFAIINNNLSQELPPYVSPINYIYESNTFEQGPSSSSHLYSTNIVAPVLVDYEQYAGLNGTSYIAEAMVSDLPPLPCRPASPILPSVVDGSLSRLIQDPDSITPTIYGEMTQIEPVSPRSNGYLESILYPPKILEGSGNKKNSSHPYEKELDEQGKHSNPKEITSLDDLADFVWLENEAVSDKDQSPPDDDFFSFFGTDFNGLL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3457g00002 388 Gene3D - 48 101 - -
Gabi3457g00002 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 151 IPR017930 -
Gabi3457g00002 388 MobiDBLite consensus disorder prediction 326 346 - -
Gabi3457g00002 388 Gene3D - 104 183 - -
Gabi3457g00002 388 CDD SANT 51 96 IPR001005 -
Gabi3457g00002 388 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Gabi3457g00002 388 SMART sant 101 149 IPR001005 -
Gabi3457g00002 388 SMART sant 48 98 IPR001005 -
Gabi3457g00002 388 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Gabi3457g00002 388 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Gabi3457g00002 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
Gabi3457g00002 388 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 35 330 - -
Gabi3457g00002 388 CDD SANT 104 147 IPR001005 -
Gabi3457g00002 388 FunFam MYB-related transcription factor 48 101 - -
Gabi3457g00002 388 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Gabi3457g00002 388 MobiDBLite consensus disorder prediction 319 346 - -
Gabi3457g00002 388 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3457g00002 Gabi-Chr3457 15373 17751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3457g00002 36 222 MYB Transcription Factor Family AT3G11440 50.249 1.19e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3457g00002 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3457g00002 K09422 - gsj:114385238 239.965