Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3457g00001 ATGGATTGCAATCAACAAAACAAGTTCGATGATGAGTTATATAAGGATGAAGATAAGGAGGAAGGGTCAGATCTTGTTCAGAATTCAATGGAAGAGAGAGAGAAGATGAGAAATTCAGCTTCTGAGTCTTGTGAAGTTGATGATGAACCAAAAGGTGATGAAGGGACAGATCAGAAACCAGTTCAAGAAATCCACAAGTGTGAATTCTGTGGGAGGGAGTTCAACTCAAGAAATGCATTAGGTGGCCATAAAAGGTTGCACCTTCAAGCTTTAAGGAAAAAGAAGGAGGCTAAAGGTAAAGGCATCAAGTTTTCTGCTTCTAATAGGAAACTCATTTGTTATATTTGTCACAAGGAATTCACATCCCAGAAGTCCTTGTTTGAGCATCTGAGATTCCACTATGAAAAGCAAGGTTCTAGTTCCTCAAACCCTGTTGGTTCCATGGAAGAGAATAAAGATGATGATGATAATGATTTTGGTGCAGTTGTTGCACCAAATGAACTAGCTATTGATCTATCACAATATTTAGCCCCAGGTTGGCTTCAGAAATATAAACGAGGAAGGAAAGCTATTTATCGTAATGGTGATTATGAAGCTGCTCGAAACCTTTTGTTTTTGAAAAAGGGTATGAATATGAACAGTGAAGTAATACTGAAGAAGGAGGATAAGAAAAGAAAGAAGTTGATAGTGAAATTGAAGGCTACAGATGTGATCTTGAAGCAGAAACAAAGGGGTCGCTACCAATGTGGCAATTGCAATAAATCATTCTCATCTTACCAAGCCCTAGGTGGACACAGATCAAGCCACAGTAAAGAGAAGAACAATAGGCCTGCAGATGTTCAGGACTTTGATCTGAATAAGGCTCCTAATGTGATGATGCGTGGATGA 888 0.3885 MDCNQQNKFDDELYKDEDKEEGSDLVQNSMEEREKMRNSASESCEVDDEPKGDEGTDQKPVQEIHKCEFCGREFNSRNALGGHKRLHLQALRKKKEAKGKGIKFSASNRKLICYICHKEFTSQKSLFEHLRFHYEKQGSSSSNPVGSMEENKDDDDNDFGAVVAPNELAIDLSQYLAPGWLQKYKRGRKAIYRNGDYEAARNLLFLKKGMNMNSEVILKKEDKKRKKLIVKLKATDVILKQKQRGRYQCGNCNKSFSSYQALGGHRSSHSKEKNNRPADVQDFDLNKAPNVMMRG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3457g00001 295 SMART c2h2final6 65 87 IPR013087 -
Gabi3457g00001 295 SMART c2h2final6 247 269 IPR013087 -
Gabi3457g00001 295 SMART c2h2final6 111 133 IPR013087 -
Gabi3457g00001 295 MobiDBLite consensus disorder prediction 266 280 - -
Gabi3457g00001 295 ProSitePatterns Zinc finger C2H2 type domain signature. 249 269 IPR013087 -
Gabi3457g00001 295 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 290 IPR044653 GO:0003700
Gabi3457g00001 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Gabi3457g00001 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Gabi3457g00001 295 SUPERFAMILY beta-beta-alpha zinc fingers 64 133 IPR036236 -
Gabi3457g00001 295 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gabi3457g00001 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 274 IPR013087 -
Gabi3457g00001 295 MobiDBLite consensus disorder prediction 261 295 - -
Gabi3457g00001 295 Pfam C2H2-type zinc finger 65 89 - -
Gabi3457g00001 295 Pfam C2H2-type zinc finger 112 135 - -
Gabi3457g00001 295 Pfam C2H2-type zinc finger 247 272 - -
Gabi3457g00001 295 Gene3D Classic Zinc Finger 220 290 - -
Gabi3457g00001 295 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Gabi3457g00001 295 Gene3D Classic Zinc Finger 35 136 - -
Gabi3457g00001 295 SUPERFAMILY beta-beta-alpha zinc fingers 245 274 IPR036236 -
Gabi3457g00001 295 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3457g00001 Gabi-Chr3457 5623 6604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3457g00001 56 135 C2H2 Transcription Factor Family AT1G49900 37.805 5.12e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3457g00001 zf-C2H2_6 3.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3457g00001 - - adu:107496635 128.642