Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3454g00003 ATGCCGCATCATTCCTTCCACAAGCTTGTTCTTCCCTCTACTCTCCAAGCCAGGCAACTGAGGATTCCGGATAACTTTATGAGGAAATATGGGGGTGAGCTTTCTCCAGTTGCTACCCTCTCTGTTCCTGATGGTAGTATCTGGCGTGTAGGATTAAAAAAGGCAGACAACAAATTTTGTTTCCATGATGGTTGGCAAGAATTTGTTCAGCGCTATGCCATTGGTGTTGGATACTTGTTGGTATTCAGATATGAAGGAAAATCATCTTTCAATGTTCATATTTTTAATTTGGCTTCTTCTGAGGTGAACTATCAATCAGCAGTACGAAACAGTAATGAAGGGCCTTACTTTGCAAATCGTCTTAAAATTTTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCTTGGATTTGTCACCTTCCCGCATTACTCCTGGTACATTGCAAAACAAAGTTTTTCCTGGATCAGTAGATAAATTAACACCTGCCAAGAGTTATACGCCTCCAGCATTGCATAATCTCTTTAACGGATCAAAACTTAATAGCATAAATTGGGGAGAGGATGGGAATGCCCTTTCTTCAAGAAGTGCCAATTCATTAGACAATCAGTTGACAAGAGATATAGGTGTTCAGTTTAATGCAGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAGTTGCGCACATCTATCGAGGAAAGGGTTAAAAAAACTGTAAGAAAGAAGCGGAAATCAGATGGCCATGAACCCTCTGCTGAACATGAAGAGGAGGCAGAAATGCGCCTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAGGAAAGAGAAAGGGCCATCAATGCCGCAAAAGCATTTGAACCATCTAATCCTTTCTGCCGGGTTGTCCTGCGGCCCTCCTATTTATATAGAGGGTGCATAATGTATTTGCCATCTTGCTTTGCAGAAAAGCATTTGAATGGGGTTTCAGGATTTATAAAACTTCAAATCTCTGATGGGAGACAATGGCCTGTTCGCTGTCTTTATAGAGGAGGTAGAGCTAAGTTAAGCCAGGGATGGTTTGAATTTTCGTTAGAGAACAATTTAGGAGAAGGTGATGTATGTGTGTTTGAGCTTCTTAGAGGGAAGGATGTAGTGCTTCAAGTTACTGTATTTCGTGTCACTGAGGATGTGGGATTGTTGAGCACTCCTTTGCATCAGAACCAAAACGTGAGCCATGCTAAACTGTTGAACACTCCCTTGCACCATCACCTAACTTCAACTAAAATGGTTAGGAATTAG 1290 0.407 MPHHSFHKLVLPSTLQARQLRIPDNFMRKYGGELSPVATLSVPDGSIWRVGLKKADNKFCFHDGWQEFVQRYAIGVGYLLVFRYEGKSSFNVHIFNLASSEVNYQSAVRNSNEGPYFANRLKIFEEMEDEDSIEILDLSPSRITPGTLQNKVFPGSVDKLTPAKSYTPPALHNLFNGSKLNSINWGEDGNALSSRSANSLDNQLTRDIGVQFNAVEFKRSTEELKLRTSIEERVKKTVRKKRKSDGHEPSAEHEEEAEMRLRFYESASARKRTVTAEERERAINAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRGKDVVLQVTVFRVTEDVGLLSTPLHQNQNVSHAKLLNTPLHHHLTSTKMVRN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3454g00003 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Gabi3454g00003 429 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Gabi3454g00003 429 Gene3D - 1 98 IPR015300 -
Gabi3454g00003 429 CDD B3_DNA 294 389 IPR003340 GO:0003677
Gabi3454g00003 429 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Gabi3454g00003 429 Gene3D - 273 394 IPR015300 -
Gabi3454g00003 429 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Gabi3454g00003 429 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Gabi3454g00003 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
Gabi3454g00003 429 MobiDBLite consensus disorder prediction 236 257 - -
Gabi3454g00003 429 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Gabi3454g00003 429 SMART B3_2 296 391 IPR003340 GO:0003677
Gabi3454g00003 429 SMART B3_2 6 98 IPR003340 GO:0003677
Gabi3454g00003 429 PANTHER B3 DOMAIN-CONTAINING 4 380 - -
Gabi3454g00003 429 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3454g00003 Gabi-Chr3454 30404 33821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3454g00003 1 395 B3 DNA Binding Superfamily AT3G18990 51.750 2.85e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3454g00003 B3 3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3454g00003 - - gmx:100813285 711.064