Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3454g00002 ATGGCAATGATAAACTCTTCGTTTCAAACTCAAATACTGTACTCTTACAAGGAAACAACCAGGCCAGTTGAGCAGATGAATGATCAACAGGACAAGCCTTCCTTCTTTACTATCATCAAGGAAGGCCTCAACACCAAGACCATGAGAGTCCCACCGAAGTTTCTAAAGTATTTGGATGAAGACTTCTCCAGTAAAGCAATTCTTATAGGCCCTTCTAGTGACCTATGGCAAGTAACTATTTATGAGAAAGGAAATGACATATATATTCAACATGGTTGGCCACAATTTCTGAGAGACAACTTGGTAATGCATGATGAGTTTTTGCTGTTTACATATGATGGAGGGAACTATTTCCGGGTGCAAATTTTTGGTAAGAATGGATGTGAGAGTCTACACTTCAAAAAAATAAGACAAGAAGAAGTTGTCATCCCGAGGAAAGAGAAGGGTTGGCCAGAAATAACTTCTGCTGGTTCTTTACACCTCCATGAAACTAAGCCTTGTCAAGAAGAACTGCTTCTGGGCAACGAAGGCTCAGTTCCTGAGAAGTACTTTTTAAAGCCTCATATTTCAACTGAACTTGAAACATCAGATGCTTACAAATTGGCCGAGTCTTTTACCTCTGACAATCCTTATTTGAAGCACCACTTGACAAAATCTAACGTGAAAAATTGTTGCATATTGCCTATCGCTACCAAGTTTGCCAGAAAGTATATTCCTGAAGTCATAGAAGAGATCATCCTTCAGAATTTGGAAGGAAAATATTGGAGAGTGACTGTGGCTTTTAATGGCACTCCAAGTCAAAGGTATACTCAATTTACAAAAGGATGGGCAAAATTCGTTCGTGATAACAAGCTCAAGAAAGGTGACATTTGCATATTTGAACTTGAACGCATAAACCATATGAGGGTTCACTTTTTTAGAAGTGCACCAAATTAG 936 0.3878 MAMINSSFQTQILYSYKETTRPVEQMNDQQDKPSFFTIIKEGLNTKTMRVPPKFLKYLDEDFSSKAILIGPSSDLWQVTIYEKGNDIYIQHGWPQFLRDNLVMHDEFLLFTYDGGNYFRVQIFGKNGCESLHFKKIRQEEVVIPRKEKGWPEITSAGSLHLHETKPCQEELLLGNEGSVPEKYFLKPHISTELETSDAYKLAESFTSDNPYLKHHLTKSNVKNCCILPIATKFARKYIPEVIEEIILQNLEGKYWRVTVAFNGTPSQRYTQFTKGWAKFVRDNKLKKGDICIFELERINHMRVHFFRSAPN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3454g00002 311 CDD B3_DNA 33 123 IPR003340 GO:0003677
Gabi3454g00002 311 ProSiteProfiles B3 DNA-binding domain profile. 212 309 IPR003340 GO:0003677
Gabi3454g00002 311 SUPERFAMILY DNA-binding pseudobarrel domain 207 307 IPR015300 -
Gabi3454g00002 311 Gene3D - 26 128 IPR015300 -
Gabi3454g00002 311 ProSiteProfiles B3 DNA-binding domain profile. 33 126 IPR003340 GO:0003677
Gabi3454g00002 311 PANTHER B3 DOMAIN-CONTAINING 29 296 - -
Gabi3454g00002 311 Gene3D - 190 309 IPR015300 -
Gabi3454g00002 311 CDD B3_DNA 210 307 IPR003340 GO:0003677
Gabi3454g00002 311 SMART B3_2 35 126 IPR003340 GO:0003677
Gabi3454g00002 311 SMART B3_2 212 309 IPR003340 GO:0003677
Gabi3454g00002 311 Pfam B3 DNA binding domain 216 308 IPR003340 GO:0003677
Gabi3454g00002 311 Pfam B3 DNA binding domain 41 125 IPR003340 GO:0003677
Gabi3454g00002 311 SUPERFAMILY DNA-binding pseudobarrel domain 29 128 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3454g00002 Gabi-Chr3454 16292 19300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3454g00002 38 307 B3 DNA Binding Superfamily AT3G18990 24.096 1.26e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3454g00002 B3 2.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3454g00002 - - aprc:113865156 314.694