Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00137 ATGGCCTCCAAGCTCTGCGATTCATGCAAATCCGCCACCGCCACACTCTATTGCCGCCCTGACTCCGCCTTCCTCTGCGGCGCCTGCGATTCGAAAGTGCACGCCGCTAACAAGCTCGCATCTCGTCACCCTCGCGTTTCACTCTGCGAAGTCTGCGAGCAAGCCCCTGCACATGTCACCTGCAAGGCAGACGCCGCCGCACTCTGCCTCGCCTGTGACCGCGACATCCACTCCGCTAACCCCCTCGCCAGCCGCCACGAACGCGTTCCCGTTACTCCTTTCTTCGAACCCTTACATTCTGTCAAATCCATTAACTTCCTCGACGATCACCGCTTCTTCTCCGACGCAAATGCCGACGTCAGCACCGAAGAGGCCGAGGCAGCTTCCTGGTTGCTCCCTACTCCTAAGCCAGATCAGTACCTATTCTCCGAAACGGAAACGGAACCCGTCCCGTACATAGATCTGGATTACGGACATGTGGATCCGAAAACGGAGCAGAAAAATTCCGTCACCGCCGACGGAATAGTTCCGGTACAGAGCAACTTTGAGACTTTCGCCTACGGTTACAAGTACAACACACAGTCACAGTCGCAGATGAGCCATAGTGTATCATCGTCGTCGATGGAGGTTGGTGTCGTGCCGGACGGGAACACTTCGTCGGAGATATCGAACTGCAGCTACGGCAAGGTTACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCGAGAGTGTTGAGGTACAGGGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGTTATGCTTCGAGGAAAGCATATGCAGAAACCAGGCCCAGGATCAAAGGAAGGTTCGCCAAACGCTCTGTTGTCGATCCTCTTGCTGGATACGGCGTCGTTCCTACCTGTTGA 891 0.5567 MASKLCDSCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERVPVTPFFEPLHSVKSINFLDDHRFFSDANADVSTEEAEAASWLLPTPKPDQYLFSETETEPVPYIDLDYGHVDPKTEQKNSVTADGIVPVQSNFETFAYGYKYNTQSQSQMSHSVSSSSMEVGVVPDGNTSSEISNCSYGKVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSVVDPLAGYGVVPTC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00137 296 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 282 IPR045281 GO:0009909
Gabi3450g00137 296 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Gabi3450g00137 296 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Gabi3450g00137 296 CDD Bbox1_BBX-like 5 48 - -
Gabi3450g00137 296 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Gabi3450g00137 296 SMART bboxneu5 49 91 IPR000315 GO:0008270
Gabi3450g00137 296 SMART bboxneu5 1 48 IPR000315 GO:0008270
Gabi3450g00137 296 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Gabi3450g00137 296 ProSiteProfiles CCT domain profile. 239 281 IPR010402 GO:0005515
Gabi3450g00137 296 Pfam CCT motif 239 281 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00137 Gabi-Chr3450 1109029 1110351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00137 1 295 C2C2-CO-like Transcription Factor Family AT5G24930 55.405 1.93e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi3450g00137 zf-B_box 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00137 - - gmx:100794431 503.056