Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00131 ATGAGTCTGTTGAGCATGGCAGAAAGGAACGAGACAGTGGCAGTGAAAGTGGGAGCAGTGCTTGATCTTTCAGGAAGGGTTGGGAAGATGGGGTTGAGCTGCATCAACATGTCCCTTTCAGAATTCTATCATTCTCATTCTGATTACAACACCAGGCTCCAATTCAGCATCAGGGATTCTCACGGGGACGTTGTTACTTCCGCTGCTGAAGCTCTGGATCTCATAAAAAATGAGGAAGTGGAAGCTATCATGGGGCCAATAACAACAATGGAGGCAAACTTTGTGATCAATCTAGGAGACAAAGCTCATGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTTCTCTTACATCCCTTCAGAGTCAATATTTTTTCCAAATTGCACAAAATGATTCAGCTCAAGTAAAAGCCATCAGTGCAGTTATCCAAGCTCTTGGATGGAAAGAAGTGGTGCCCATTTACGTAGACAATAGTTATGGTGAAGGAGTTATTCCTTGCTTAACCAATGTTCTACAACAAGCTTATGTGCGAGTTCCTTATCTCAGTGCCATTTCTCTTTCAGCAACTGATGAAGCAATTAAAAGTGAGCTCTATAAGTTGATGACAATGCAAACCCGAGTATTTGTTGTGCACATGTCACCACGTTTTGGTTTTCACCTCTTAACCATTGCAAGTCAGATTGGAATGATGGAGCAAGGCTATGTTTGGATCCTAACCGATGGTATGGCTAATTGGTTCAACTCCTTAAACTCCTCTGTCATGGAATCGATGGAAGGAGTATTGGGTGTTAGGCCTTATATTCCAAGAACAAAAGCTCTTGATGATTTTAAAGCTCGATGGAAACGAAAGTTCCTGCCAGACAATCCAACACTTGTTGACACAAATTTGAACGTTTATGGAATATGGGCTTATGATGCTACCACAGCATTAGCAATGGCTGTTGAGAAGGTAGGAACCGCAAATTTTGTGAACAACACTTCAAGCAACGTATCTGATCTTGAAAAGTTTGGCATTTCACAAAATGGTGAGAAGCTGCGTGAAGCTTTGTCAAACACGAGATTTACAGGCCTCAGTGGTGAGTTCAATGTACTTGGTGGGCAGTTACAAGCATCAACATTTGAGATAATTAACGTGGTTGGTGATGGGGAAAGGAGGGTAGGATTTTGGACTCCCCATAAGGGGTTAGCAAGAAATTTTGATACAAAAAGAACAAGCATGTACTCTACTTCTAAGGACAATCTGGGACCCATTATGTGGCCAGGGGATACGACCTCTGTTCCAAAGGGATGGGAGATTCCCACAAATGGGAACAAGTTGAGGGTAGGAGTTCCAGTCAAAGATGGAAATGGTTTTACTGAATTTGTGAAAGTAACATATGACCCTAGTACTAATTCAACAGAGGTCACTGGCTTCTGCATTGATGTCTTCAAAGCTGTGCTGGAAGTGTTGCCTTATGCCCTACCGTGTGAATTTATTCCATTTTCATTGCCAGATGGAGAGATGAAAGGAACATATGATGAATTGGTCAGCCAAGTTTATTATGGGAAATTTGATGCTGTGGTAGGGGATACAACGATTATTGCAAACAGGTCCACATATATTGATTTCACATTGCCATACACAGAATCTGGTGTGACAATGGTTGTTCCAGTGAAAGCAAACAAGAAGAAGAATGCGTGGGCCTTTTTGAAGCCACTAACATGGGAACTTTGGGTAACAACGGCTTGTTCATTTGTATTCATTGCATTTGTTGTGTGGGTCCTTGAACACCGAATAAACAACAGTTTCAGAGGGCCTCCCTCGAATCAAATTGGCACAAGCTTATGGTTTTCATTTTCAATCATGGTTTCTGCCCATCGGGAGAAAGTGGTTAGCAACTTGGGTAGATTTGTAGTGATCGTATGGGTTTTTGTGCTTCTAATTCTGGTTCAAAGTTACACTGCAAGCCTCTCTTCACTCTTAACAGTTGATCAACTGAGGCCAACTATTACAGACGTCAATCAACTCATAAAGAATAGAATGAATGTTGGCTATCTGAAAGGTTCTTTTGTTCATGGAATATTGAAGGACTTGGGTTTCCAAGATAAACAGCTCAAAAATTATACCTCCGTAGAAGAATGCAATGAGTTTTTCACAAAAGGAAGTGTAAATGGTGGCATTGCTGCTGCGTTTGACGAAGTTCCCTACGTGAAGCACTTTCTTGGAACTTATTGCTCCAAGTATGCAATGGTTGAACCCAGGTTTAAAACTGGGGGCTTTGGCTTTGTGTTCCCAAAAGGTTCTCCACTTGTAGCTGATATTTCAAGGGCAATCTTGAATGTGACTCAGGGAGACAAAATGAGAACAATTGAGAATGCATGGTTCAAGGATATTAGTTGTCAAGAGTATAGTACAGAAATTTCCTCTAATAATAGTCTTGGCCTTGAAAGCTTCTGGGGTCTGTTTCTCATTGCAGGGACTGCTTCCTTATTAGCACTCATAATCTTTGCAACGACATTCCTATATCAGCACAGACATATCTGGTTTGGCCATGATCCAAATACTTCAATGTGGAGACGTATTGGAATCTTGGTAGGGATATTTGATCAGAGAGACTTGAATTGTCGCACATTCAAGAAAAGTGAGATGCGAAATAAAAGTGAAACTAGTAGTCTTCATCATGGATCAGGTGCAATTGAGACATTCCCAAGTACACAATGCCCTCCAAGTCCGTCCAGTCAAACTGAGTCAAACTCTCCATTTCATGGAGACCAAGGAATGTTCAGTCCAGACAATGGTGATGCTGATCCATATGGTTATGCAGCTCATTCTAAAGACACAGAAATGACCCTCATGCAACCTGCAAACAACTGTAACATGAACTCCCAATCAACATAG 2877 0.4154 MSLLSMAERNETVAVKVGAVLDLSGRVGKMGLSCINMSLSEFYHSHSDYNTRLQFSIRDSHGDVVTSAAEALDLIKNEEVEAIMGPITTMEANFVINLGDKAHVPIVTFSATSPSLTSLQSQYFFQIAQNDSAQVKAISAVIQALGWKEVVPIYVDNSYGEGVIPCLTNVLQQAYVRVPYLSAISLSATDEAIKSELYKLMTMQTRVFVVHMSPRFGFHLLTIASQIGMMEQGYVWILTDGMANWFNSLNSSVMESMEGVLGVRPYIPRTKALDDFKARWKRKFLPDNPTLVDTNLNVYGIWAYDATTALAMAVEKVGTANFVNNTSSNVSDLEKFGISQNGEKLREALSNTRFTGLSGEFNVLGGQLQASTFEIINVVGDGERRVGFWTPHKGLARNFDTKRTSMYSTSKDNLGPIMWPGDTTSVPKGWEIPTNGNKLRVGVPVKDGNGFTEFVKVTYDPSTNSTEVTGFCIDVFKAVLEVLPYALPCEFIPFSLPDGEMKGTYDELVSQVYYGKFDAVVGDTTIIANRSTYIDFTLPYTESGVTMVVPVKANKKKNAWAFLKPLTWELWVTTACSFVFIAFVVWVLEHRINNSFRGPPSNQIGTSLWFSFSIMVSAHREKVVSNLGRFVVIVWVFVLLILVQSYTASLSSLLTVDQLRPTITDVNQLIKNRMNVGYLKGSFVHGILKDLGFQDKQLKNYTSVEECNEFFTKGSVNGGIAAAFDEVPYVKHFLGTYCSKYAMVEPRFKTGGFGFVFPKGSPLVADISRAILNVTQGDKMRTIENAWFKDISCQEYSTEISSNNSLGLESFWGLFLIAGTASLLALIIFATTFLYQHRHIWFGHDPNTSMWRRIGILVGIFDQRDLNCRTFKKSEMRNKSETSSLHHGSGAIETFPSTQCPPSPSSQTESNSPFHGDQGMFSPDNGDADPYGYAAHSKDTEMTLMQPANNCNMNSQST 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00131 958 CDD GluR_Plant 437 788 - -
Gabi3450g00131 958 Gene3D - 559 701 - -
Gabi3450g00131 958 Gene3D - 132 295 - -
Gabi3450g00131 958 Pfam Ligand-gated ion channel 790 820 IPR001320 GO:0015276|GO:0016020
Gabi3450g00131 958 SUPERFAMILY Periplasmic binding protein-like II 417 789 - -
Gabi3450g00131 958 Pfam Receptor family ligand binding region 34 380 IPR001828 -
Gabi3450g00131 958 MobiDBLite consensus disorder prediction 942 958 - -
Gabi3450g00131 958 PIRSF IGluLR_plant 1 920 IPR017103 -
Gabi3450g00131 958 SUPERFAMILY Periplasmic binding protein-like I 15 421 IPR028082 -
Gabi3450g00131 958 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 878 IPR015683 -
Gabi3450g00131 958 CDD PBP1_GABAb_receptor_plant 16 399 IPR044440 -
Gabi3450g00131 958 MobiDBLite consensus disorder prediction 883 918 - -
Gabi3450g00131 958 SMART GluR_14 440 790 IPR001320 GO:0015276|GO:0016020
Gabi3450g00131 958 FunFam Glutamate receptor 2.7 696 795 - -
Gabi3450g00131 958 FunFam Glutamate receptor 438 559 - -
Gabi3450g00131 958 Pfam Bacterial extracellular solute-binding proteins, family 3 465 789 IPR001638 -
Gabi3450g00131 958 FunFam Glutamate receptor 305 437 - -
Gabi3450g00131 958 Gene3D - 738 795 - -
Gabi3450g00131 958 MobiDBLite consensus disorder prediction 877 958 - -
Gabi3450g00131 958 Gene3D - 453 558 - -
Gabi3450g00131 958 FunFam Glutamate receptor 130 284 - -
Gabi3450g00131 958 Gene3D - 337 442 - -
Gabi3450g00131 958 FunFam Glutamate receptor 559 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00131 Gabi-Chr3450 1026893 1032625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00131 9 909 Ion Channels AT2G29120 52.591 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00131 K05387 - qsa:O6P43_019170 1233.39