Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00130 ATGAGTCTGTTGAGCATGGCAGAAAGGAACGAGACAGTGGCAGTGAAAGTGGGAGCAGTGCTTGATCTTTCAGGAAGGGTTGGGAAGATGGGGTTGAGCTGCATCAACATGTCCCTTTCAGAATTCTATCATTCTCATTCTGATTACAACACCAGGCTCCAATTCAGCATCAGGGATTCTCACGGGGACGTTGTTACTTCCGCTGCTGAAGCTCTGGATCTCATAAAAAATGAGGAAGTGGAAGCTATCATGGGGCCAATAACAACAATGGAGGCAAACTTTGTGATCAATCTAGGAGACAAAGCTCATGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTTCTCTTACATCCCTTCAGAGTCAATATTTTTTCCAAATTGCACAAAATGATTCAGCTCAAGTAAAAGCCATCAGTGCAGTTATCCAAGCTCTTGGATGGAAAGAAGTGGTGCCCATTTACGTAGACAATAGTTATGGTGAAGGAGTTATTCCTTGCTTAACCAATGTTCTACAACAAGCTTATGTGCGAGTTCCTTATCTCAGTGCCATTTCTCTTTCAGCAACTGATGAAGCAATTAAAAGTGAGCTCTATAAGTTGATGACAATGCAAACCCGAGTATTTGTTGTGCACATGTCACCACGTTTTGGTTTTCACCTCTTAACCATTGCAAGTCAGATTGGAATGATGGAGCAAGGCTATGTTTGGATCCTAACCGATGGTATGGCTAATTGGTTCAACTCCTTAAACTCCTCTGTCATGGAATCGATGGAAGGAGTATTGGGTGTTAGGCCTTATATTCCAAGAACAAAAGCTCTTGATGATTTTAAAGCTCGATGGAAACGAAAGTTCCTGCCAGACAATCCAACACTTGTTGACACAAATTTGAACGTTTATGGAATATGGGCTTATGATGCTACCACAGCATTAGCAATGGCTGTTGAGAAGGTAGGAACCGCAAATTTTGTGAACAACACTTCAAGCAACGTATCTGATCTTGAAAAGTTTGGCATTTCACAAAATGGTGAGAAGCTGCGTGAAGCTTTGTCAAACACGAGATTTACAGGCCTCAGTGGTGAGTTCAATGTACTTGGTGGGCAGTTACAAGCATCAACATTTGAGATAATTAACGTGGTTGGTGATGGGGAAAGGAGGGTAGGATTTTGGACTCCCCATAAGGGGTTAGCAAGAAATTTTGATACAAAAAGAACAAGCATGTACTCTACTTCTAAGGACAATCTGGGACCCATTATGTGGCCAGGGGATACGACCTCTGTTCCAAAGGGATGGGAGATTCCCACAAATGGGAACAAGTTGAGGGTAGGAGTTCCAGTCAAAGATGGAAATGGTTTTACTGAATTTGTGAAAGTAACATATGACCCTAGTACTAATTCAACAGAGGTCACTGGCTTCTGCATTGATGTCTTCAAAGCTGTGCTGGAAGTGTTGCCTTATGCCCTACCGTGTGAATTTATTCCATTTTCATTGCCAGATGGAGAGATGAAAGGAACAACGATTATTGCAAACAGGTCCACATATATTGATTTCACATTGCCATACACAGAATCTGGTGTGACAATGGTTGTTCCAGTGAAAGCAAACAAGAAGAAGAATGCGTGGGCCTTTTTGAAGCCACTAACATGGGAACTTTGGGTAACAACGGCTTGTTCATTTGTATTCATTGCATTTGTTGTGTGGGTCCTTGAACACCGAATAAACAACAGTTTCAGAGGGCCTCCCTCGAATCAAATTGGCACAAGCTTATGGTTTTCATTTTCAATCATGGTTTCTGCCCATCGGGAGAAAGTGGTTAGCAACTTGGGTAGATTTGTAGTGATCGTATGGGTTTTTGTGCTTCTAATTCTGGTTCAAAGTTACACTGCAAGCCTCTCTTCACTCTTAACAGTTGATCAACTGAGGCCAACTATTACAGACGTCAATCAACTCATAAAGAATAGAATGAATGTTGGCTATCTGAAAGGTTCTTTTGTTCATGGAATATTGAAGGACTTGGGTTTCCAAGATAAACAGCTCAAAAATTATACCTCCGTAGAAGAATGCAATGAGTTTTTCACAAAAGGAAGTGTAAATGGTGGCATTGCTGCTGCGTTTGACGAAGTTCCCTACGTGAAGCACTTTCTTGGAACTTATTGCTCCAAGTATGCAATGGTTGAACCCAGGTTTAAAACTGGGGGCTTTGGCTTTGTGTTCCCAAAAGGTTCTCCACTTGTAGCTGATATTTCAAGGGCAATCTTGAATGTGACTCAGGGAGACAAAATGAGAACAATTGAGAATGCATGGTTCAAGGATATTAGTTGTCAAGAGTATAGTACAGAAATTTCCTCTAATAATAGTCTTGGCCTTGAAAGCTTCTGGGGTCTGTTTCTCATTGCAGGGACTGCTTCCTTATTAGCACTCATAATCTTTGCAACGACATTCCTATATCAGCACAGACATATCTGGTTTGGCCATGATCCAAATACTTCAATGTGGAGACGTATTGGAATCTTGGTAGGGATATTTGATCAGAGAGACTTGAATTGTCGCACATTCAAGAAAAGTGAGATGCGAAATAAAAGTGAAACTAGTAGTCTTCATCATGGATCAGGTGCAATTGAGACATTCCCAAGTACACAATGCCCTCCAAGTCCGTCCAGTCAAACTGAGTCAAACTCTCCATTTCATGGAGACCAAGGAATGTTCAGTCCAGACAATGGTGATGCTGATCCATATGGTTATGCAGCTCATTCTAAAGACACAGAAATGACCCTCATGCAACCTGCAAACAACTGTAACATGAACTCCCAATCAACATAG 2817 0.416 MSLLSMAERNETVAVKVGAVLDLSGRVGKMGLSCINMSLSEFYHSHSDYNTRLQFSIRDSHGDVVTSAAEALDLIKNEEVEAIMGPITTMEANFVINLGDKAHVPIVTFSATSPSLTSLQSQYFFQIAQNDSAQVKAISAVIQALGWKEVVPIYVDNSYGEGVIPCLTNVLQQAYVRVPYLSAISLSATDEAIKSELYKLMTMQTRVFVVHMSPRFGFHLLTIASQIGMMEQGYVWILTDGMANWFNSLNSSVMESMEGVLGVRPYIPRTKALDDFKARWKRKFLPDNPTLVDTNLNVYGIWAYDATTALAMAVEKVGTANFVNNTSSNVSDLEKFGISQNGEKLREALSNTRFTGLSGEFNVLGGQLQASTFEIINVVGDGERRVGFWTPHKGLARNFDTKRTSMYSTSKDNLGPIMWPGDTTSVPKGWEIPTNGNKLRVGVPVKDGNGFTEFVKVTYDPSTNSTEVTGFCIDVFKAVLEVLPYALPCEFIPFSLPDGEMKGTTIIANRSTYIDFTLPYTESGVTMVVPVKANKKKNAWAFLKPLTWELWVTTACSFVFIAFVVWVLEHRINNSFRGPPSNQIGTSLWFSFSIMVSAHREKVVSNLGRFVVIVWVFVLLILVQSYTASLSSLLTVDQLRPTITDVNQLIKNRMNVGYLKGSFVHGILKDLGFQDKQLKNYTSVEECNEFFTKGSVNGGIAAAFDEVPYVKHFLGTYCSKYAMVEPRFKTGGFGFVFPKGSPLVADISRAILNVTQGDKMRTIENAWFKDISCQEYSTEISSNNSLGLESFWGLFLIAGTASLLALIIFATTFLYQHRHIWFGHDPNTSMWRRIGILVGIFDQRDLNCRTFKKSEMRNKSETSSLHHGSGAIETFPSTQCPPSPSSQTESNSPFHGDQGMFSPDNGDADPYGYAAHSKDTEMTLMQPANNCNMNSQST 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00130 938 CDD GluR_Plant 437 768 - -
Gabi3450g00130 938 MobiDBLite consensus disorder prediction 922 938 - -
Gabi3450g00130 938 SUPERFAMILY Periplasmic binding protein-like I 15 421 IPR028082 -
Gabi3450g00130 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 858 IPR015683 -
Gabi3450g00130 938 Pfam Bacterial extracellular solute-binding proteins, family 3 465 769 IPR001638 -
Gabi3450g00130 938 MobiDBLite consensus disorder prediction 863 898 - -
Gabi3450g00130 938 FunFam Glutamate receptor 130 284 - -
Gabi3450g00130 938 CDD PBP1_GABAb_receptor_plant 16 399 IPR044440 -
Gabi3450g00130 938 Gene3D - 539 681 - -
Gabi3450g00130 938 FunFam Glutamate receptor 2.7 676 775 - -
Gabi3450g00130 938 PIRSF IGluLR_plant 1 899 IPR017103 -
Gabi3450g00130 938 FunFam Glutamate receptor 539 669 - -
Gabi3450g00130 938 Gene3D - 718 775 - -
Gabi3450g00130 938 Pfam Receptor family ligand binding region 34 380 IPR001828 -
Gabi3450g00130 938 Gene3D - 453 538 - -
Gabi3450g00130 938 FunFam Glutamate receptor 305 437 - -
Gabi3450g00130 938 MobiDBLite consensus disorder prediction 857 938 - -
Gabi3450g00130 938 SMART GluR_14 440 770 IPR001320 GO:0015276|GO:0016020
Gabi3450g00130 938 Pfam Ligand-gated ion channel 770 800 IPR001320 GO:0015276|GO:0016020
Gabi3450g00130 938 Gene3D - 337 442 - -
Gabi3450g00130 938 Gene3D - 132 295 - -
Gabi3450g00130 938 SUPERFAMILY Periplasmic binding protein-like II 417 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00130 Gabi-Chr3450 1026893 1032625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00130 9 889 Ion Channels AT2G29120 51.495 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00130 K05387 - qsa:O6P43_019170 1192.95