Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00129 ATGGAGAGCGATTGTATTGAGGACATGGACATTGAAGTTCTCCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAACAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGCTGATTTTAAGCGTCTTATGGAGCTTACAAATTTTACAGAGAAGGGTTCTTCTCAGTTGGCGTATCTTATGAAACACTGGGAGTATAAGCAGGCCAATATTGTACGTCTACTCAGAGAAGAACTTGACAACCTAAGCAAGCAGAGGCAGGATGTTGAACTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGGGGTGATAAACGCCCAGTTTCTATATTGGATGATATTTATGATATATGGCAAGATGTACCATGCAGGAAAAGTGATGATGTTGTGGTTCAAAACAAGAGAATTGAAATTGATGCTGAGTATGATACCGTTATATACTGGAAACAGCGAGCCATGCATTTAGAAAAGTTGCTGGAGGCAAGTATCCAGAGAGAACAGATACTTGAAGAAAAGTTACAAGAAAGTATAAAGAACATTGAAAGGCAATCCTCACCGGTTGAAGAACTCTCCCAGATCCTGAAGAGGGCTGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAATTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGATATCATTGGAAAAACGGATGTTGAAATATTCACGGGATCTGGTGTTAGGGAATCTCAAGATTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACGGAACTATTTGGATCAAAGACATTCTTGATATATGTAGAACCAGTCTTTAGCAAGGCAGGAGAGACACTTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACAGAACTGAATAAGACCATTCACATTACAGAGGAAACCATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGAGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAGCTCTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAATCAGGAGTTATGAAGTTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACGTTAGAAGGACATGTGGCAGATGATGTACCTATCGAGGTGAGGACTTGTGTCATAGGTGACGTTTTAAGGATTCGGCAAATTCTCACGAATTTAGTCAGCAATGCCATCAAGTTTACCCATGAAGGCAAAGTTGGGATAAACCTTTACGTTGTGCCTGAGTCAACATTTGCAAAAGCAGAAGGCGTCCAAAAGATGACTCCAAACCACTCAACTATTTCAGTGAATGGAGTGAAAGAAGAGAAATATCTCCAAAACCATGCAATTAATTGTGAATGTAGATATCCAGTTAAAAGCGAATGCTCAATGAGCGGAGACACTGAGGAGCAACCTCATTCAGCTGAAGGAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATTGGAATACCAGAAAACGCTATACCTACTTTGTTTAAAAGGTACATGCAAGTTAGTGCAGACCATGCTAGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTAATGGGGGGTCATCTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACGTTCATACTCCCATACAAGGTTTCAATCGTTTGTGATAATTCTGATGAGTCAGATGTGGAGAATAATGATGCCGTGTCTGATGATACAACAGAGGGTTTCTTCCAATTCCATCCACGCACTTTGGGCTCTCTTTTCTCTTCTAATGGATCTAGCAGGACCAAGAAGTTATTACCACACAAAATTGAGTACATAAGCTCACATGAATTCATTGGGTTTTCAGAGAGTTCATACTCATTGCCCTCTAAGGACATCATTTCAAAAGGGACATGTTCAGTTGATGATGCATTTTCAATGGTTGATGCTCCAGAGATGTCTGAATCAGCTTGTTCAAATGGTCACAGCTCAGAAGCAAAGAGTGAAAGTTTAGTTAACAGAGACAAACAGCATCAAGATAAGCCTCATGCTTGGTCCCAGAATGGGAGTGCAGATTCTTCTCAACCTACGGCAAACACAACTACTACCAAATGTGTTACTAGCAGCAGTGCATCAGAAGTAACCAAATCCAAGTTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAATCCATGATGAAGCGGTTAGGTCATAGCATAGATGTTGTAAATAATGGAGTGGAAGCAGTAAATGCAGTTCAGAGCCGCTCTTACGACCTGGTTCTGATGGATGTTTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTTATCCGGTCTTTCGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATTGAGCTAAGTCAACCAGATCCAGATTATGAATGTTCTGTAACATCTACAAAGCGGATCCCCATTATTATGACAGCAAATGCTTTGTCAGAGAGTGCAGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTAAAAGAGTGTCTTGAACAATACCTAAGGTGA 2904 0.4022 MESDCIEDMDIEVLPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIADFKRLMELTNFTEKGSSQLAYLMKHWEYKQANIVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDIWQDVPCRKSDDVVVQNKRIEIDAEYDTVIYWKQRAMHLEKLLEASIQREQILEEKLQESIKNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETLGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVRTCVIGDVLRIRQILTNLVSNAIKFTHEGKVGINLYVVPESTFAKAEGVQKMTPNHSTISVNGVKEEKYLQNHAINCECRYPVKSECSMSGDTEEQPHSAEGTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGHLTVSSKEHHGSTFTFILPYKVSIVCDNSDESDVENNDAVSDDTTEGFFQFHPRTLGSLFSSNGSSRTKKLLPHKIEYISSHEFIGFSESSYSLPSKDIISKGTCSVDDAFSMVDAPEMSESACSNGHSSEAKSESLVNRDKQHQDKPHAWSQNGSADSSQPTANTTTTKCVTSSSASEVTKSKLKPKILLVEDNKINVMVTQSMMKRLGHSIDVVNNGVEAVNAVQSRSYDLVLMDVCMPVMNGLQATKLIRSFEETGNWDAARNAGIELSQPDPDYECSVTSTKRIPIIMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYLR 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00129 967 Gene3D - 816 967 - -
Gabi3450g00129 967 ProSiteProfiles Response regulatory domain profile. 824 966 IPR001789 GO:0000160
Gabi3450g00129 967 MobiDBLite consensus disorder prediction 754 813 - -
Gabi3450g00129 967 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 330 IPR035965 -
Gabi3450g00129 967 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Gabi3450g00129 967 Gene3D PAS domain 209 345 - -
Gabi3450g00129 967 FunFam Putative histidine kinase 5 356 433 - -
Gabi3450g00129 967 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Gabi3450g00129 967 MobiDBLite consensus disorder prediction 770 784 - -
Gabi3450g00129 967 Pfam Response regulator receiver domain 825 892 IPR001789 GO:0000160
Gabi3450g00129 967 CDD REC_hyHK_CKI1_RcsC-like 825 962 - -
Gabi3450g00129 967 SMART REC_2 823 962 IPR001789 GO:0000160
Gabi3450g00129 967 FunFam Histidine kinase 5 210 345 - -
Gabi3450g00129 967 SMART HKATPase_4 483 658 IPR003594 -
Gabi3450g00129 967 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 422 656 IPR036890 -
Gabi3450g00129 967 SUPERFAMILY CheY-like 823 967 IPR011006 -
Gabi3450g00129 967 Coils Coil 88 115 - -
Gabi3450g00129 967 FunFam Histidine kinase 5 817 967 - -
Gabi3450g00129 967 PRINTS Bacterial sensor protein C-terminal signature 618 636 IPR004358 GO:0016310|GO:0016772
Gabi3450g00129 967 PRINTS Bacterial sensor protein C-terminal signature 642 655 IPR004358 GO:0016310|GO:0016772
Gabi3450g00129 967 PRINTS Bacterial sensor protein C-terminal signature 583 597 IPR004358 GO:0016310|GO:0016772
Gabi3450g00129 967 MobiDBLite consensus disorder prediction 785 813 - -
Gabi3450g00129 967 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 656 IPR003594 -
Gabi3450g00129 967 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 9 966 - -
Gabi3450g00129 967 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Gabi3450g00129 967 ProSiteProfiles Histidine kinase domain profile. 375 658 IPR005467 -
Gabi3450g00129 967 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 433 IPR036097 GO:0000155|GO:0007165
Gabi3450g00129 967 Coils Coil 185 205 - -
Gabi3450g00129 967 CDD HATPase_EvgS-ArcB-TorS-like 488 655 - -
Gabi3450g00129 967 Gene3D - 434 661 IPR036890 -
Gabi3450g00129 967 Gene3D - 356 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00129 Gabi-Chr3450 1019690 1024968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00129 1 966 Histidine Kinase Gene Family AT5G10720 59.324 0.0 1100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3450g00129 HATPase_c 9.2e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00129 - - gmx:100819520 1582