Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00122 ATGGAGATGGTAAAGCATGCCATGGCTGGTGCTGCTGATTCTAATTCTATCACTAATCAGACTCACACCCCTTCTTCTTCTTCTTCTTCTTCTACTACTACTTCTGGTAATGATCATAACAAGTTATACAAAGGTGTGAGAAAGCGAAAGTGGGGGAAATGGGTATCTGAAATAAGGCTTCCCAATAGCCGTGAACGCATATGGTTAGGGTCTCATGACTCTCCTGAGAAAGCTGCTCGAGCCTTTGATGCTGCCCTTTATTGTCTACGTGGTCGCCATGCCAATTTCAATTTCCCTGACACACCTTTCAACTTGAATATCAATATAGCTGCTGCTGCCGGTGGTGCTGGTGGTGGTGGTGACAAATCTCTTACCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTTGCCAGCGAGGAGGTCCCACCAATTGATCATAATCAAGAACCTCAAAGTACTACTAATTATACCACAGCCTCCTCCTCGTCTTCTTCTACTATGTGTGAATATGATGGGACAGTGCAAGTGGAACATGGAGGGGACATGATGAACACAATGGATTGGACATTTTTGAATGTGTTGGATGATCACTCCATTGTTGGCCCCGATTATGTTCTCTATTCTGAGCTAGACAGAATGCACTCGGGTGAGTTATTGTATTCCACTCCACCACCACCAACCCCTTTTGTGGACAATGAGGGCGAAATTGAAGATGATGACCCTTTTTCTCACCAATCTTTCCTTTGGAATTGGAACTTTTGA 762 0.4436 MEMVKHAMAGAADSNSITNQTHTPSSSSSSSTTTSGNDHNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSHDSPEKAARAFDAALYCLRGRHANFNFPDTPFNLNINIAAAAGGAGGGGDKSLTPQEIQEVAAKFASEEVPPIDHNQEPQSTTNYTTASSSSSSTMCEYDGTVQVEHGGDMMNTMDWTFLNVLDDHSIVGPDYVLYSELDRMHSGELLYSTPPPPTPFVDNEGEIEDDDPFSHQSFLWNWNF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00122 253 MobiDBLite consensus disorder prediction 12 40 - -
Gabi3450g00122 253 MobiDBLite consensus disorder prediction 1 42 - -
Gabi3450g00122 253 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Gabi3450g00122 253 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Gabi3450g00122 253 Pfam AP2 domain 43 91 IPR001471 GO:0003700|GO:0006355
Gabi3450g00122 253 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Gabi3450g00122 253 MobiDBLite consensus disorder prediction 145 164 - -
Gabi3450g00122 253 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Gabi3450g00122 253 MobiDBLite consensus disorder prediction 139 164 - -
Gabi3450g00122 253 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Gabi3450g00122 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 178 - -
Gabi3450g00122 253 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Gabi3450g00122 253 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Gabi3450g00122 253 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00122 Gabi-Chr3450 939657 940418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00122 43 137 AP2-EREBP Transcription Factor Family AT1G74930 67.368 1.66e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3450g00122 AP2 7.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00122 - - gmx:100808434 247.284