Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00117 ATGGCGGACGTGATGATGATGAAAGAGATTGAGGACACAGCTTCGCGTCTCGGAGTCGATCTTTCTACCATTGATCTCGACGCCATTCGCCTCCCTCCAGGCGATGATTTTGGCGTCACCAGTGACGATGAAGATATTTACCAAGAGGATAATCTGGAGTTTGAGTCTGGATTCGGCAACATTATAGTGGTGGATAACCTACCAGTTGTTCCACGGGAGAAGTTTGAGAAGCTTGAAGGTGTCGTTCGTAAAATTTATAGTCAGATTGGTGTTATCAAGGATGATGGTCTCTGGATGCCCGTTGATCCCGCCACTGAGAAGACTTTAGGTTACTGCTTCATTGAGTATAATACCGCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGATACAAATTGGACCGTTTACACATATTTTCCGTCAGCATGTTCGATGACTTTGACAGGTTTATGAAAGTTCCAGACGAATGGGCTCCTCCTGAAACTAAGCCATATACTCCAGGGGAAAACCTTCAATATTGGCTCACTGATGCAAAGGCCAGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAACGATGCAAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCTCTGGGCACATACTTGGCAACAGTTCACAGGCAGGGGGCAGCAGTCTGGGGAGGTGCTTTAACCTTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAATCGATGAGAGATTTTAAAGGAAGTGCTGATGATTTTGCTATTGGAGGTACTGGGGGTGTCACTGGGGTGTCCTGGCCTGTTTTCAGATGGAGTGGTGGAAGAGATGATAAGTACTTTGCAAGGATGGGGAAAAATGTACTGTCTGTGTATGAGACTGAGAACTTTTTTCTGATTGACAAGAAGTCCTTGAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCAATTATTTCCCTCTTTGTTCCTGAGATGGGGGGTGGTAACCAGCCTGCTAGGGTAAGTTTGATTCAAATCCCCGGCAAAGAGGAACTCAGGCAAAAGAACCTTTTTAGTGTAAGTGATTGCAAAATGTACTGGCAAAGCCATGGAGAGTACCTTGCTGTCAAGGTTGATCGTTACACAAAAACCAAGAAAAGTACATACACTGGCTTTGAGCTTTTTCGTATAAAAGAACGAGACATACCTATTGAAGTGTTGGAGCTTGAGAATAAAAATGACAAGATCATTGCATTTGCCTGGGAACCAAAGGGCCATAGGTTTGTTGTGATTCATGGTGATAACCCAAAGCCTGATGTTAGCATCTACTCTATGCGTACTGCTCAGAACACTGGCCGGGTTTCAAAGCTCACTACTCTGAAAGGAAAGCAAGCAAATGCTCTGTTCTGGTCACCTGCAGGTCGCTTCATTGTACTAGCTGGGTTGAAAGGCTTCAACGGACAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCCACCGACATTGAATGGGATCCTACCGGAAGGTATGTTGCGACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTCTATAGGATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGACCAAGGCCACCATCTTTCCTGAGTGCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAGGCAGAAGATCAAGATGTTTCGCTGCTCCTGAGCGAGCAGGAGCGTGAGAAGCGTAGAATGTTGAAAGAAGATTGGGACAAATGGGTCAACGAATGGAAGCAGATGCACGAAGAAGAGAAGTTATATAGGCAAAAACTCAGGGATGGCGAGGCTAGCGACGAAGAAGAGGAATACGAGGCAAAGGACATTGAAGTGGAGGAAGTGATCGATGTATCACAAGAGGTCCTTCACTTCGAGTATGGTCAAGAGTGA 2160 0.4398 MADVMMMKEIEDTASRLGVDLSTIDLDAIRLPPGDDFGVTSDDEDIYQEDNLEFESGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKDDGLWMPVDPATEKTLGYCFIEYNTAQEAELAKEKTHGYKLDRLHIFSVSMFDDFDRFMKVPDEWAPPETKPYTPGENLQYWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGALTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKSMRDFKGSADDFAIGGTGGVTGVSWPVFRWSGGRDDKYFARMGKNVLSVYETENFFLIDKKSLKVENIMDFSWSPTDPIISLFVPEMGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSHGEYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEDWDKWVNEWKQMHEEEKLYRQKLRDGEASDEEEEYEAKDIEVEEVIDVSQEVLHFEYGQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00117 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Gabi3450g00117 719 CDD RRM_eIF3B 59 143 IPR034363 -
Gabi3450g00117 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Gabi3450g00117 719 SUPERFAMILY RNA-binding domain, RBD 50 139 IPR035979 GO:0003676
Gabi3450g00117 719 Gene3D - 55 154 IPR012677 -
Gabi3450g00117 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 709 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gabi3450g00117 719 Coils Coil 618 638 - -
Gabi3450g00117 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gabi3450g00117 719 Gene3D - 180 388 IPR015943 GO:0005515
Gabi3450g00117 719 Gene3D - 418 632 IPR015943 GO:0005515
Gabi3450g00117 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Gabi3450g00117 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Gabi3450g00117 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
Gabi3450g00117 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gabi3450g00117 719 SUPERFAMILY DPP6 N-terminal domain-like 217 604 - -
Gabi3450g00117 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Gabi3450g00117 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00117 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 77.183 0.0 1183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00117 K03253 - gmx:100817394 1374.38