Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00116 ATGGGTGATGATGGTAGAGTTGAAGTTGTGAGTGTTAAAGGGTGCTCAAGGCTGTTTTCGTCTTCTTTTTCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGCCTCCTGTTCCGTCCTCTGTGCAAGTGCGATCAAATGCTCCTTTTGCTGGCCTTGTTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAAGTCATGGACGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCGCAATGCACCCATTTGGTGGTTCAAATATCCTGTGGCCGTAAGTTTGAGCATGCCGTGAAGCATGGGGTAAAAAATGGTATCTTTATTGTCACTCTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCACATTATAGTGTGAAGAGTTATGGGGATAACAATATGCGCTTGGATGATTTTAAATTGCTTCCTGTGCATACAAATACTGAAAATTATTGTCTTCCTGCAAGAATCCTTGAAACCAAGCATGCTAATAGTGTTGAAGAATTTCAAAGATTCTCTGGGAGAGAGTCTAACAGAAATTTGGACTCAACTTTGTCTGGTTTCTCTGTCTATGTTGATCCAGGCATTTCATCTGAATTACGGAACAAGGTTATTGAGACTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACGTCCATCCAAAGATATCTTGGATACACTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCAAAGGCTTGTTCACATGTCTGCTGATTTGGCAAGGCAAGTTGGCTTAATGCTTGAAGACATTCATAATGGCATTTCAGGGAAGAAAGTAATAAAGCAAAAAGTCCATGACGATTGTCAGGGCAGTGAAAGTGAAGTTAGTTACAAAGAAAGGCAACAAATTGTGAATTATGCAAAAATTGGTGTTAGAAATCGCCGCGGTCGTCGAATGCAGACATGTCAGACACCAATTCGTCCTATAACGCCCAACAACCTTCTGGACTCTATCTGTTGGTCAATATCCGAGCCAACTTCAAATGCTTCAATTTACACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAATCATACTTCTGTATTTTTTGATGCAAAAGTGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTACTCTAACAGAAAGTGAGAAATCTGAGTTGATATTTAAAAACCATTTTCTTACCATACTCTTTCCAATTGACCGGTTTGCTGAGATGGGTCCTTCTTCAAGAACGTTCTTAAGCCATAATGGTTTTACGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATGAGGAGAACATGTCAAGCCAGGAAATAGAAGCTGCAATTCACACTGATTCAAGACATGCTGATAGGCTTCGATCAGTGTACTCCAGTAAGGAAACAACAGAGCGTGGCTATGTGATGTTCAAAAGGATTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAACGTGTAACTGGGGACAACAACTCCAACGTGTATGAGCTATTACTTAGGGCGTAA 1617 0.4069 MGDDGRVEVVSVKGCSRLFSSSFSSFRGLQPLEPMPPVPSSVQVRSNAPFAGLVICVTGLSKEARNQVMDATERLGGQYSPNLHPQCTHLVVQISCGRKFEHAVKHGVKNGIFIVTLGWFVDSVRKNVRLSESHYSVKSYGDNNMRLDDFKLLPVHTNTENYCLPARILETKHANSVEEFQRFSGRESNRNLDSTLSGFSVYVDPGISSELRNKVIETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYTSNLITPLWILKTAKEKYVQRLVHMSADLARQVGLMLEDIHNGISGKKVIKQKVHDDCQGSESEVSYKERQQIVNYAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSNASIYTDSFSVEDPSENHTSVFFDAKVDGKDSEASFSNSTRTLTESEKSELIFKNHFLTILFPIDRFAEMGPSSRTFLSHNGFTCLQVLDHIHAFYEENMSSQEIEAAIHTDSRHADRLRSVYSSKETTERGYVMFKRIEFLGSRTSFEMLKRVTGDNNSNVYELLLRA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00116 538 ProSiteProfiles BRCT domain profile. 45 137 IPR001357 -
Gabi3450g00116 538 Pfam Family of unknown function (DUF6699) 445 522 IPR046522 -
Gabi3450g00116 538 ProSiteProfiles BRCT domain profile. 191 269 IPR001357 -
Gabi3450g00116 538 CDD BRCT_TopBP1_rpt2_like 49 127 - -
Gabi3450g00116 538 Gene3D BRCT domain 48 139 IPR036420 -
Gabi3450g00116 538 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 4 538 - -
Gabi3450g00116 538 SMART BRCT_7 193 269 IPR001357 -
Gabi3450g00116 538 SMART BRCT_7 47 127 IPR001357 -
Gabi3450g00116 538 Pfam twin BRCT domain 53 119 IPR001357 -
Gabi3450g00116 538 SUPERFAMILY BRCT domain 47 138 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00116 49 137 Core DNA Replication Machinery Family AT1G77320 40.449 4.87e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00116 - - gmx:100815253 910.983