Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00115 ATGGACTGCGAGGGTCAGATATCAGAACTTGAAAATATCTTGGATTCTCAGAGATATACTATCGAAGATCGGACAGAGATGGATGTGTGTATCTCTTCTGCAAAAGAGAGTTGTAGATTTTATGACCCAGCACGATTTCCTGCTTTGAGTTTGAAGCCAAAGATTGAATCCTTGTGGTCCAAGTCTGATGTATTGTCTGAATTTCAAAGTAACTATAAGGATGTGGACAATAAATTTAAGACGCTACATCAGCGGATGACCAATGAACTTGCTAAAATTTTATATTGCCTCGAAGATCTTGGACTGCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAAAATTTCTCCAAAATTGAAGGAGATTGTGAACTTTACAGAAACGGTTATCTTCAGTGTAAAACTGTCATTGAAGAAGTAATCCAAATAATTGAAGAATCTCTCCATGTTGCTGGTAAAAATATTTTGGAGGTTGAATTTGATTATTCAAAGGCAGTTGACTTGGGATACATATCTCCAAAATTGCTAGAACTTATTCAACTCTTCCAGTTGTTTGGAGAATCTCGTCAGGTGTTGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATCGAAAGATTTGTAAAAAAGGTTTCCCAGCTATCTCATTTCACTGTTTCCTATTTAACTGGAAACAACACATCGGTTGATGCACTGGCTCCAAAGAGGCAAAAGGAAATATTGGATTCTTTCCGCTCTGGAAAGGTTAATCTATTATTTACTACTGATGTACTTGAAGAAGGAATTCATGTGTCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCCAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGCTAACTCCCAGTTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAGTCAACTCTTTGACATCATCCGGAGTGAGCGCAGCATGACTAATGCAGCTATTAATAAAGACCATGAATCTAGTTTACAGCCGTGCACAGTATGGAAAACAAATGCATACTATGTGGATTCTACTGGAGCATCAGTCACTCTAGATTCTAGTGTCAGTCTTATAAATCGATATTGTGGAAAACTCCCACGAGATAAGTACTTCTGTGCAAAGCCGACTTTTGAGTTTCTGCCTATGGAGGGGGGTTACAAGAGTAAAATAATATTACCACCTAATGCAGCTTTCCACACAATGGTTGGTCCTTCAGGAAAAGATGTTCGTTTGGCAAAGCATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTGAATGATCATCTTGTGCCTTTCATTGAAGATCCTTCAGAAGCTGACCATATTGTGGAAAACAAAGAACTGAATTCAGGTGCAGGAACAACAAAAAGAAAGGAGTTGCATGGCACAGCCAGCATTCGTGCATTATGTGGTACTTGGGGAGACAAATTTGATGGAGCCAAATTTCATGCCTATAGATTGGATTTCACATGCAATATTGTTACTGAAATTTACTCTGCATTTGTTCTTCTGGTTGAGTCAAAGCTTGATGATGATGTGGGGAATATGAAATTAGATCTTCATTTGATCTCAAAGACTGTGAAGGCTTCAGTCTCTGCATGTGGGCAAGTTGATTTGGATGCTGAACAGATGATCAAGGCAAAATGCTTCCATGAGCTTATATTCAATGGTTTGTATGGGAGATTGGTTCTTAGGTCCAAATCAGCGAGAGGGGAAAGGGAATTTTTGCTTCAGGAAGACACAAAATCATTGTGGAGCCCAAATAACTTATATTTGCTTCTACCACTTGAAAAATTGAATGATATATGTAAGGGATCTTTGCAAATAAACTGGAGTGGAATCAATTCCTGCGCCTCTGCTATTGAATATTTAAGGAGGAAATTTTTGTTGGTTGCTGGAGATTGTGATGCTAACAGCAAGATCACATCACCTTGTAATATCAGTTCATCAGAGGTGGAATGTGAAGGCACAAACAAGATTCACTTTGCGAATTGTGTGCTCGATGTTAATAATCTAAAAAATATGGTAGTTTTGGCCATTCACACTGGGAGAATATATTGTATTATTGAAGTAGACATTAATCTATGTGCTGATAGTCCTTTTGATGGAAACAATGAAAAGTCTGAGGAATGCATAACCTTCGCGGATTACTACAGCAAAAGGTATGGGATTACGCTGAGACATCCAGGACAGCCTTTGTTACGTTTGAAGCAAAGTCATAATCCACACAATCTTTTTTTGAACTTCCATGAGGAAGTAGATGCAAGGTACAAGTCATCACAAACTGGCCCGGTAATCCCAAAGGTGCCCGCGCATGTTCACATTCCACCCGAGCTTTTATGCATTCTTGATGTTAATAGAGATGTATTGAGGTCATTGTACTTGCTACCATCTATGATGTACCGTATTGAATCTTTCATGTTATCCAGTCAGCTTAGAGTAGAGATAAATGGTCAGACTAGCAATTTCAACATACATAGCTCCCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTGGGAGATTCTGTTTTGAAATATGCAGTAAGCTGTCAGCTCTTTCTTGAATATCCTAATAAACATGAAGGACAATTATCTGCCAGACGATCAAGGGCTGTTCGTAATTCAACCCTGCATAAACTGGGAACAGATCGCAAATTACAGGGATATATCCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGCTCTATACATATTGTTCGTTGTGATTGCGGGTTGGAAACCCTAGAAGTGCCTTTAGACGTAAAATTCCATACTGAAGATCCAAAAATTGTGGTTGGGAAGTTCTGTGACAGGGGTCACCGCTGGATTTGCTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTTATTGCGTCACTTCATGTGATGAAATGGCTTGGGATTGATGCTGACCTTAAACCATCCTTGGTTGTTGAAGCCATCACTGCTGCCTCTCTGCACACATGTGTGCCAAAAGTAAATGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTGTTATTGGAGGCAATCACACATTTGTCTGAGACAAAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTTTTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACGCAGATATTGATCCAGGAGAGTTGACTGACCTGCGATCGGCTTCTGTAAATAATGAAAATTTTGCTAAAGTTGCTGTTAGACGAAACCTTCACAAACACCTCTTGCATAGCTCAGGGTTTTTACTGAATCAGATATCAGAATATGTGAAGTCCATTTTTGAATCAGAGAACAACACCAGAACTCTCCCAGGAATTAAAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTGTACTAATTGATAGCAAGCTCAGTCTTAACGAAGTGTGGAAGATTTTCAATCCTCTACTATCTCCCATTGTTACTCCTGAAAAACTTGAACTGCCTCCATTCCGGGAATTAAATCAATTATGCGACTCACTTGGATATTTTGTAAAAGTAAAAGAAAATTGTGAAAAGAATGGATCCATGGAGCATGTTGAGCTTAGCGTACAGCTGCCACATGCCCTCTTGGTTCAAGAGGGAAAGGGGCACAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGAACTTGAGAAGAGGGGAATTTCATATGGTAGTAGCATTTCTAAGGGAAAAAGTGATAATCCTGACTGTCTCCGTGATTCATCTTTTCTCAAAATGGACTTTAGTATTGGCTCTGGTCTAACTGACGAACATTCCTCAAAGCCAGTCGTGCATAAAAGGCCCAAATTGGATGAAACTAACGTAACTGCAAGTGCATCTGCTGGTTTTTTACCTCTCAAAGACTCTTTCGGTGAAACCTCTGATTTTAATGCTTCTGTTCCAGTTATTGCATCAATTAGTATGAAGAAAGGAGGACCCCGAACCACACTATATGAGCTGTGCAAGAGACTACAATGGCCATTGCCAGCGTTTGATTCAACAGAATATAAAGACAGAACTCTATTTGAATCCGTGGAAAGAAGCAAGGGACATATCTGTTTTGTGTCTAAAATTACCTTATGCATACCCAATGATGGTAATATAGAATGTGAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCATGTGACTCTGCTGCTGTTCAAATGCTTCATGAGCTACAACGACTGGGAAAACTTAAGATTGGTGATCCCTAA 4380 0.3982 MDCEGQISELENILDSQRYTIEDRTEMDVCISSAKESCRFYDPARFPALSLKPKIESLWSKSDVLSEFQSNYKDVDNKFKTLHQRMTNELAKILYCLEDLGLLCAYEAVKICHENFSKIEGDCELYRNGYLQCKTVIEEVIQIIEESLHVAGKNILEVEFDYSKAVDLGYISPKLLELIQLFQLFGESRQVLCLIFVERIITAKVIERFVKKVSQLSHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVSNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFIVMLERGNLKQRSQLFDIIRSERSMTNAAINKDHESSLQPCTVWKTNAYYVDSTGASVTLDSSVSLINRYCGKLPRDKYFCAKPTFEFLPMEGGYKSKIILPPNAAFHTMVGPSGKDVRLAKHLVCLEACKKLHQMGALNDHLVPFIEDPSEADHIVENKELNSGAGTTKRKELHGTASIRALCGTWGDKFDGAKFHAYRLDFTCNIVTEIYSAFVLLVESKLDDDVGNMKLDLHLISKTVKASVSACGQVDLDAEQMIKAKCFHELIFNGLYGRLVLRSKSARGEREFLLQEDTKSLWSPNNLYLLLPLEKLNDICKGSLQINWSGINSCASAIEYLRRKFLLVAGDCDANSKITSPCNISSSEVECEGTNKIHFANCVLDVNNLKNMVVLAIHTGRIYCIIEVDINLCADSPFDGNNEKSEECITFADYYSKRYGITLRHPGQPLLRLKQSHNPHNLFLNFHEEVDARYKSSQTGPVIPKVPAHVHIPPELLCILDVNRDVLRSLYLLPSMMYRIESFMLSSQLRVEINGQTSNFNIHSSLILEALTTLRCCENFSMERLELLGDSVLKYAVSCQLFLEYPNKHEGQLSARRSRAVRNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHIVRCDCGLETLEVPLDVKFHTEDPKIVVGKFCDRGHRWICSKTIADCVEALIGAYYVGGGLIASLHVMKWLGIDADLKPSLVVEAITAASLHTCVPKVNEIASLEKKIGYEFSVKGLLLEAITHLSETKLGIGCCYERLEFLGDSVLDLLITWHLYQSHADIDPGELTDLRSASVNNENFAKVAVRRNLHKHLLHSSGFLLNQISEYVKSIFESENNTRTLPGIKAPKALGDLVESIAGAVLIDSKLSLNEVWKIFNPLLSPIVTPEKLELPPFRELNQLCDSLGYFVKVKENCEKNGSMEHVELSVQLPHALLVQEGKGHNKKTAKGEAAFHLLKELEKRGISYGSSISKGKSDNPDCLRDSSFLKMDFSIGSGLTDEHSSKPVVHKRPKLDETNVTASASAGFLPLKDSFGETSDFNASVPVIASISMKKGGPRTTLYELCKRLQWPLPAFDSTEYKDRTLFESVERSKGHICFVSKITLCIPNDGNIECEGEARSDKKSSCDSAAVQMLHELQRLGKLKIGDP 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00115 1459 SMART helicmild6 207 294 IPR001650 -
Gabi3450g00115 1459 Pfam Ribonuclease III domain 858 992 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 Pfam Ribonuclease III domain 1070 1178 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 CDD SF2_C_dicer 170 302 - -
Gabi3450g00115 1459 PANTHER DICER-RELATED 2 1277 - -
Gabi3450g00115 1459 Gene3D Ribonuclease III domain 831 1004 IPR036389 GO:0004525|GO:0006396
Gabi3450g00115 1459 Gene3D - 167 330 IPR027417 -
Gabi3450g00115 1459 ProSiteProfiles Ribonuclease III family domain profile. 1034 1179 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 SMART riboneu5 840 1013 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 SMART riboneu5 1049 1202 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 ProSitePatterns Ribonuclease III family signature. 1070 1078 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 Pfam Dicer dimerisation domain 361 446 - -
Gabi3450g00115 1459 FunFam Endoribonuclease dicer-like 1 1028 1200 - -
Gabi3450g00115 1459 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 361 451 IPR005034 GO:0016891
Gabi3450g00115 1459 CDD RIBOc 1050 1200 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 307 IPR027417 -
Gabi3450g00115 1459 ProSiteProfiles PAZ domain profile. 683 796 IPR003100 GO:0005515
Gabi3450g00115 1459 SUPERFAMILY RNase III domain-like 835 1009 IPR036389 GO:0004525|GO:0006396
Gabi3450g00115 1459 Pfam Helicase conserved C-terminal domain 178 291 IPR001650 -
Gabi3450g00115 1459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 180 332 IPR001650 -
Gabi3450g00115 1459 SUPERFAMILY PAZ domain 681 796 IPR036085 GO:0005515
Gabi3450g00115 1459 Gene3D Ribonuclease III domain 1030 1202 IPR036389 GO:0004525|GO:0006396
Gabi3450g00115 1459 Gene3D - 1374 1450 - -
Gabi3450g00115 1459 Gene3D paz domain 667 794 - -
Gabi3450g00115 1459 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1250 1273 IPR014720 -
Gabi3450g00115 1459 FunFam Endoribonuclease dicer-like 1 356 452 - -
Gabi3450g00115 1459 FunFam Dicer-like 104 672 793 - -
Gabi3450g00115 1459 CDD RIBOc 840 1004 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 SUPERFAMILY RNase III domain-like 1033 1199 IPR036389 GO:0004525|GO:0006396
Gabi3450g00115 1459 ProSiteProfiles Ribonuclease III family domain profile. 817 993 IPR000999 GO:0004525|GO:0006396
Gabi3450g00115 1459 SMART PAZ_2_a_3 657 820 IPR003100 GO:0005515
Gabi3450g00115 1459 Pfam PAZ domain 681 816 IPR003100 GO:0005515
Gabi3450g00115 1459 FunFam Endoribonuclease dicer-like 1 142 328 - -
Gabi3450g00115 1459 FunFam Dicer-like 104 816 1005 - -
Gabi3450g00115 1459 Gene3D Dicer dimerisation domain 356 453 IPR038248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00115 Gabi-Chr3450 857286 882057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00115 192 291 Eukaryotic Initiation Factors Gene Family AT3G19760 37.383 3.37e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00115 K11592 - gmx:100806831 2239.92