Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00114 ATGGACTCATCGAACCACAACCAGAAAAATAGTAACTGTCTCAAGCGATCCTACGATGACTTATGCTCAAAACCCTACGCCGAGGATTCTCCATATCAAGAATTGACGTCTTCCGACACACCCCAGAACATTGACCCTAGAAGGTATCAGTTGGAGGTGTTTGAAGTTGCAAGGAGGAGAAACACAATAGCAGTGTTGGATACAGGCTCCGGTAAGACCTTGATAGCTATAATGCTAATAAAAGACATTGGTCAAGGTATCAAGTCTAGTGGCGTAAAAAAGTTGATTATTTTCCTAGCTCCCACCGTTCATCTTGTCAATCAGCAATTCAACATTATAAAATATCTTACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTCGATACATGGAATTTAAAGACCTGGGAAAAGGAGATTATTGACAATGATGTACTGGTTATGACGCCCCAGATTCTATTGGATGCCTTAAGAAAAGCATTCCTGAGTATAGAAATGATATCCTTGATGATTATTGATGAATGTCATAGAGCAACTGGCAACCATCCATATGCAAAAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCGTCACCGGTAGGTAAAAAAGGTGTTTCCTCTACTATGGACTGCGAGGGTCAGATATCAGAACTTGAAAATATCTTGGATTCTCAGAGATATACTATCGAAGATCGGACAGAGATGGATGTGTGTATCTCTTCTGCAAAAGAGAGTTGTAGATTTTATGACCCAGCACGATTTCCTGCTTTGAGTTTGAAGCCAAAGATTGAATCCTTGTGGTCCAAGTCTGATGTATTGTCTGAATTTCAAAGTAACTATAAGGATGTGGACAATAAATTTAAGACGCTACATCAGCGGATGACCAATGAACTTGCTAAAATTTTATATTGCCTCGAAGATCTTGGACTGCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAAAATTTCTCCAAAATTGAAGGAGATTGTGAACTTTACAGAAACGGTTATCTTCAGTGTAAAACTGTCATTGAAGAAGTAATCCAAATAATTGAAGAATCTCTCCATGTTGCTGGTAAAAATATTTTGGAGGTTGAATTTGATTATTCAAAGGCAGTTGACTTGGGATACATATCTCCAAAATTGCTAGAACTTATTCAACTCTTCCAGTTGTTTGGAGAATCTCGTCAGGTGTTGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATCGAAAGATTTGTAAAAAAGGTTTCCCAGCTATCTCATTTCACTGTTTCCTATTTAACTGGAAACAACACATCGGTTGATGCACTGGCTCCAAAGAGGCAAAAGGAAATATTGGATTCTTTCCGCTCTGGAAAGGTTAATCTATTATTTACTACTGATGTACTTGAAGAAGGAATTCATGTGTCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCCAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGCTAACTCCCAGTTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAGTCAACTCTTTGACATCATCCGGAGTGAGCGCAGCATGACTAATGCAGCTATTAATAAAGACCATGAATCTAGTTTACAGCCGTGCACAGTATGGAAAACAAATGCATACTATGTGGATTCTACTGGAGCATCAGTCACTCTAGATTCTAGTGTCAGTCTTATAAATCGATATTGTGGAAAACTCCCACGAGATAAGTACTTCTGTGCAAAGCCGACTTTTGAGTTTCTGCCTATGGAGGGGGGTTACAAGAGTAAAATAATATTACCACCTAATGCAGCTTTCCACACAATGGTTGGTCCTTCAGGAAAAGATGTTCGTTTGGCAAAGCATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTGAATGATCATCTTGTGCCTTTCATTGAAGATCCTTCAGAAGCTGACCATATTGTGGAAAACAAAGAACTGAATTCAGGTGCAGGAACAACAAAAAGAAAGGAGTTGCATGGCACAGCCAGCATTCGTGCATTATGTGGTACTTGGGGAGACAAATTTGATGGAGCCAAATTTCATGCCTATAGATTGGATTTCACATGCAATATTGTTACTGAAATTTACTCTGCATTTGTTCTTCTGGTTGAGTCAAAGCTTGATGATGATGTGGGGAATATGAAATTAGATCTTCATTTGATCTCAAAGACTGTGAAGGCTTCAGTCTCTGCATGTGGGCAAGTTGATTTGGATGCTGAACAGATGATCAAGGCAAAATGCTTCCATGAGCTTATATTCAATGGTTTGTATGGGAGATTGGTTCTTAGGTCCAAATCAGCGAGAGGGGAAAGGGAATTTTTGCTTCAGGAAGACACAAAATCATTGTGGAGCCCAAATAACTTATATTTGCTTCTACCACTTGAAAAATTGAATGATATATGTAAGGGATCTTTGCAAATAAACTGGAGTGGAATCAATTCCTGCGCCTCTGCTATTGAATATTTAAGGAGGAAATTTTTGTTGGTTGCTGGAGATTGTGATGCTAACAGCAAGATCACATCACCTTGTAATATCAGTTCATCAGAGGTGGAATGTGAAGGCACAAACAAGATTCACTTTGCGAATTGTGTGCTCGATGTTAATAATCTAAAAAATATGGTAGTTTTGGCCATTCACACTGGGAGAATATATTGTATTATTGAAGTAGACATTAATCTATGTGCTGATAGTCCTTTTGATGGAAACAATGAAAAGTCTGAGGAATGCATAACCTTCGCGGATTACTACAGCAAAAGGTATGGGATTACGCTGAGACATCCAGGACAGCCTTTGTTACGTTTGAAGCAAAGTCATAATCCACACAATCTTTTTTTGAACTTCCATGAGGAAGTAGATGCAAGGTACAAGTCATCACAAACTGGCCCGGTAATCCCAAAGGTGCCCGCGCATGTTCACATTCCACCCGAGCTTTTATGCATTCTTGATGTTAATAGAGATGTATTGAGGTCATTGTACTTGCTACCATCTATGATGTACCGTATTGAATCTTTCATGTTATCCAGTCAGCTTAGAGTAGAGATAAATGGTCAGACTAGCAATTTCAACATACATAGCTCCCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTGGGAGATTCTGTTTTGAAATATGCAGTAAGCTGTCAGCTCTTTCTTGAATATCCTAATAAACATGAAGGACAATTATCTGCCAGACGATCAAGGGCTGTTCGTAATTCAACCCTGCATAAACTGGGAACAGATCGCAAATTACAGGGATATATCCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGCTCTATACATATTGTTCGTTGTGATTGCGGGTTGGAAACCCTAGAAGTGCCTTTAGACGTAAAATTCCATACTGAAGATCCAAAAATTGTGGTTGGGAAGTTCTGTGACAGGGGTCACCGCTGGATTTGCTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTTATTGCGTCACTTCATGTGATGAAATGGCTTGGGATTGATGCTGACCTTAAACCATCCTTGGTTGTTGAAGCCATCACTGCTGCCTCTCTGCACACATGTGTGCCAAAAGTAAATGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTGTTATTGGAGGCAATCACACATTTGTCTGAGACAAAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTTTTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACGCAGATATTGATCCAGGAGAGTTGACTGACCTGCGATCGGCTTCTGTAAATAATGAAAATTTTGCTAAAGTTGCTGTTAGACGAAACCTTCACAAACACCTCTTGCATAGCTCAGGGTTTTTACTGAATCAGATATCAGAATATGTGAAGTCCATTTTTGAATCAGAGAACAACACCAGAACTCTCCCAGGAATTAAAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTGTACTAATTGATAGCAAGCTCAGTCTTAACGAAGTGTGGAAGATTTTCAATCCTCTACTATCTCCCATTGTTACTCCTGAAAAACTTGAACTGCCTCCATTCCGGGAATTAAATCAATTATGCGACTCACTTGGATATTTTGTAAAAGTAAAAGAAAATTGTGAAAAGAATGGATCCATGGAGCATGTTGAGCTTAGCGTACAGCTGCCACATGCCCTCTTGGTTCAAGAGGGAAAGGGGCACAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGAACTTGAGAAGAGGGGAATTTCATATGGTAGTAGCATTTCTAAGGGAAAAAGTGATAATCCTGACTGTCTCCGTGATTCATCTTTTCTCAAAATGGACTTTAGTATTGGCTCTGGTCTAACTGACGAACATTCCTCAAAGCCAGTCGTGCATAAAAGGCCCAAATTGGATGAAACTAACGTAACTGCAAGTGCATCTGCTGGTTTTTTACCTCTCAAAGACTCTTTCGGTGAAACCTCTGATTTTAATGCTTCTGTTCCAGTTATTGCATCAATTAGTATGAAGAAAGGAGGACCCCGAACCACACTATATGAGCTGTGCAAGAGACTACAATGGCCATTGCCAGCGTTTGATTCAACAGAATATAAAGACAGAACTCTATTTGAATCCGTGGAAAGAAGCAAGGGACATATCTGTTTTGTGTCTAAAATTACCTTATGCATACCCAATGATGGTAATATAGAATGTGAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCATGTGACTCTGCTGCTGTTCAAATGCTTCATGAGCTACAACGACTGGGAAAACTTAAGATTGGTGATCCCTAA 5037 0.3977 MDSSNHNQKNSNCLKRSYDDLCSKPYAEDSPYQELTSSDTPQNIDPRRYQLEVFEVARRRNTIAVLDTGSGKTLIAIMLIKDIGQGIKSSGVKKLIIFLAPTVHLVNQQFNIIKYLTDFQVEEYYGAKGVDTWNLKTWEKEIIDNDVLVMTPQILLDALRKAFLSIEMISLMIIDECHRATGNHPYAKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEGQISELENILDSQRYTIEDRTEMDVCISSAKESCRFYDPARFPALSLKPKIESLWSKSDVLSEFQSNYKDVDNKFKTLHQRMTNELAKILYCLEDLGLLCAYEAVKICHENFSKIEGDCELYRNGYLQCKTVIEEVIQIIEESLHVAGKNILEVEFDYSKAVDLGYISPKLLELIQLFQLFGESRQVLCLIFVERIITAKVIERFVKKVSQLSHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVSNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFIVMLERGNLKQRSQLFDIIRSERSMTNAAINKDHESSLQPCTVWKTNAYYVDSTGASVTLDSSVSLINRYCGKLPRDKYFCAKPTFEFLPMEGGYKSKIILPPNAAFHTMVGPSGKDVRLAKHLVCLEACKKLHQMGALNDHLVPFIEDPSEADHIVENKELNSGAGTTKRKELHGTASIRALCGTWGDKFDGAKFHAYRLDFTCNIVTEIYSAFVLLVESKLDDDVGNMKLDLHLISKTVKASVSACGQVDLDAEQMIKAKCFHELIFNGLYGRLVLRSKSARGEREFLLQEDTKSLWSPNNLYLLLPLEKLNDICKGSLQINWSGINSCASAIEYLRRKFLLVAGDCDANSKITSPCNISSSEVECEGTNKIHFANCVLDVNNLKNMVVLAIHTGRIYCIIEVDINLCADSPFDGNNEKSEECITFADYYSKRYGITLRHPGQPLLRLKQSHNPHNLFLNFHEEVDARYKSSQTGPVIPKVPAHVHIPPELLCILDVNRDVLRSLYLLPSMMYRIESFMLSSQLRVEINGQTSNFNIHSSLILEALTTLRCCENFSMERLELLGDSVLKYAVSCQLFLEYPNKHEGQLSARRSRAVRNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHIVRCDCGLETLEVPLDVKFHTEDPKIVVGKFCDRGHRWICSKTIADCVEALIGAYYVGGGLIASLHVMKWLGIDADLKPSLVVEAITAASLHTCVPKVNEIASLEKKIGYEFSVKGLLLEAITHLSETKLGIGCCYERLEFLGDSVLDLLITWHLYQSHADIDPGELTDLRSASVNNENFAKVAVRRNLHKHLLHSSGFLLNQISEYVKSIFESENNTRTLPGIKAPKALGDLVESIAGAVLIDSKLSLNEVWKIFNPLLSPIVTPEKLELPPFRELNQLCDSLGYFVKVKENCEKNGSMEHVELSVQLPHALLVQEGKGHNKKTAKGEAAFHLLKELEKRGISYGSSISKGKSDNPDCLRDSSFLKMDFSIGSGLTDEHSSKPVVHKRPKLDETNVTASASAGFLPLKDSFGETSDFNASVPVIASISMKKGGPRTTLYELCKRLQWPLPAFDSTEYKDRTLFESVERSKGHICFVSKITLCIPNDGNIECEGEARSDKKSSCDSAAVQMLHELQRLGKLKIGDP 1678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00114 1678 SMART riboneu5 1268 1421 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 SMART riboneu5 1059 1232 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 SUPERFAMILY PAZ domain 900 1015 IPR036085 GO:0005515
Gabi3450g00114 1678 FunFam Endoribonuclease dicer-like 1 575 671 - -
Gabi3450g00114 1678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 526 IPR027417 -
Gabi3450g00114 1678 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 210 IPR014001 -
Gabi3450g00114 1678 MobiDBLite consensus disorder prediction 30 44 - -
Gabi3450g00114 1678 Gene3D Ribonuclease III domain 1249 1421 IPR036389 GO:0004525|GO:0006396
Gabi3450g00114 1678 MobiDBLite consensus disorder prediction 24 44 - -
Gabi3450g00114 1678 ProSiteProfiles PAZ domain profile. 902 1015 IPR003100 GO:0005515
Gabi3450g00114 1678 FunFam Dicer-like 104 1035 1224 - -
Gabi3450g00114 1678 Gene3D Ribonuclease III domain 1050 1223 IPR036389 GO:0004525|GO:0006396
Gabi3450g00114 1678 SMART PAZ_2_a_3 876 1039 IPR003100 GO:0005515
Gabi3450g00114 1678 CDD SF2_C_dicer 389 521 - -
Gabi3450g00114 1678 SUPERFAMILY RNase III domain-like 1252 1418 IPR036389 GO:0004525|GO:0006396
Gabi3450g00114 1678 ProSiteProfiles Ribonuclease III family domain profile. 1036 1212 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 Gene3D Dicer dimerisation domain 575 672 IPR038248 -
Gabi3450g00114 1678 CDD RIBOc 1269 1419 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 Gene3D paz domain 886 1013 - -
Gabi3450g00114 1678 PANTHER DICER-RELATED 60 1496 - -
Gabi3450g00114 1678 SMART ultradead3 42 241 IPR014001 -
Gabi3450g00114 1678 Pfam Dicer dimerisation domain 580 665 - -
Gabi3450g00114 1678 ProSitePatterns Ribonuclease III family signature. 1289 1297 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 SUPERFAMILY RNase III domain-like 1054 1228 IPR036389 GO:0004525|GO:0006396
Gabi3450g00114 1678 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1469 1492 IPR014720 -
Gabi3450g00114 1678 Pfam Ribonuclease III domain 1077 1211 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 Pfam Ribonuclease III domain 1289 1397 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 Pfam Helicase conserved C-terminal domain 397 510 IPR001650 -
Gabi3450g00114 1678 Pfam Type III restriction enzyme, res subunit 32 210 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gabi3450g00114 1678 ProSiteProfiles Ribonuclease III family domain profile. 1253 1398 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 FunFam Endoribonuclease dicer-like protein 41 280 - -
Gabi3450g00114 1678 SMART helicmild6 426 513 IPR001650 -
Gabi3450g00114 1678 FunFam Endoribonuclease dicer-like 1 384 547 - -
Gabi3450g00114 1678 FunFam Dicer-like 104 891 1012 - -
Gabi3450g00114 1678 Gene3D - 1593 1669 - -
Gabi3450g00114 1678 CDD RIBOc 1059 1223 IPR000999 GO:0004525|GO:0006396
Gabi3450g00114 1678 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 551 IPR001650 -
Gabi3450g00114 1678 Pfam PAZ domain 900 1035 IPR003100 GO:0005515
Gabi3450g00114 1678 FunFam Endoribonuclease dicer-like 1 1247 1419 - -
Gabi3450g00114 1678 Gene3D - 41 284 IPR027417 -
Gabi3450g00114 1678 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 580 670 IPR005034 GO:0016891
Gabi3450g00114 1678 CDD DEXHc_dicer 46 242 - -
Gabi3450g00114 1678 Gene3D - 386 549 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00114 Gabi-Chr3450 855149 882057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00114 411 510 Eukaryotic Initiation Factors Gene Family AT3G19760 37.383 3.95e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00114 K11592 - gmx:100806831 2563.49