Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00103 ATGACTTCTAAAAAGATTACATGGAAGTCTATTGTCTTGATCTTAAGTTGTTACAAGACTAGATGCCGCCCCTTGCAGGAATCAGAAAAACAGGTTTTAAAACAAGGTTCTTTCCAAAGGCTATGCCTCTCGGATGTAAGCTTTTCGAGTTCCACTCAGGCCATTGAAGATCTTTCCATTTCCCTCGTTGGCTCAAACCTTTACACATTCACCCTAGAGGAGCTAAGACAAGTCACACATAATTTCTCATGGAGTAATCTGCTTGGTGAAGGCGGGTTTGGACCCGTGTACAAGGGTTTTGTTGATGACAAACTTAGACCTGGTTTGAAGGCTCAACCTGTAGCTGTGAAACGACTGGACTTGGATGGTTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATTGGATATTGTTGCGAGGAGGAGCACAGGCTTTTGGTGTATGAATACATGGCAAGAAGCAGCTTGGAGAATCAACTGTTCAGAAGATGCTCTGCTGCCTTGCCATGGTCTACAAGGATGAAAATTGCATTGGGTGCAGCTAAGGGTCTGGCCTTCCTTCATGAATCAGATAAACCTGTAATATACAGGGATTTCAAAACATCAAATATCTTACTGGACTCGGATTACACAGCTAAATTATCAGATTTCGGACTAGCTAAGGATGGTCCTGAAGGGGAAGACACACATTTAACAACAACATGCATAATGGGAACACAAGGCTATGCTGCTCCTGAGTACATCATGGCAGGTCACCTTTCCACCAAGAGTGATGTGTACAGCTATGGAGTGGTTTTGTTGGAACTGCTTACAGGAAAACGGGTAGTGGATAGGACACGGCCAAATCGAGAGCGCAACCTGGTGGAATGGACAAGGCCTCTTCTGAGAGATCAAAGAAAGCTGCAGCATATCATAGACCAAAGATTGGAAGGGCAGTTTCCTATGAAAGGAGCTATGAAGGTTGCTGCATTGACTTATAAATGCTTGTGTCACAACCCTTCTCCAAGACCCACTATGAGTGATGTGGTAAAGATACTGGAGTCACTTCAGGACTTCGACGATGTTATCATAGGACCGTTTGTGTATGTGGCCGTAAGTGAAAGTGGTCACTGA 1155 0.4424 MTSKKITWKSIVLILSCYKTRCRPLQESEKQVLKQGSFQRLCLSDVSFSSSTQAIEDLSISLVGSNLYTFTLEELRQVTHNFSWSNLLGEGGFGPVYKGFVDDKLRPGLKAQPVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARSSLENQLFRRCSAALPWSTRMKIALGAAKGLAFLHESDKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGEDTHLTTTCIMGTQGYAAPEYIMAGHLSTKSDVYSYGVVLLELLTGKRVVDRTRPNRERNLVEWTRPLLRDQRKLQHIIDQRLEGQFPMKGAMKVAALTYKCLCHNPSPRPTMSDVVKILESLQDFDDVIIGPFVYVAVSESGH 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00103 384 SUPERFAMILY Protein kinase-like (PK-like) 58 362 IPR011009 -
Gabi3450g00103 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi3450g00103 384 CDD STKc_IRAK 88 363 - -
Gabi3450g00103 384 Gene3D Phosphorylase Kinase; domain 1 44 164 - -
Gabi3450g00103 384 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 369 - -
Gabi3450g00103 384 Gene3D Transferase(Phosphotransferase) domain 1 165 370 - -
Gabi3450g00103 384 ProSiteProfiles Protein kinase domain profile. 82 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00103 384 PANTHER OS01G0588500 PROTEIN-RELATED 51 364 - -
Gabi3450g00103 384 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
Gabi3450g00103 384 Pfam Protein tyrosine and serine/threonine kinase 85 360 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00103 Gabi-Chr3450 779689 781912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00103 69 360 Glycoside Hydrolase AT3G07070 51.525 2.28e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3450g00103 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00103 - - gmx:100805771 670.618