Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00091 ATGGCATTTCGGTGTGAACTCCTCCTTCTGGTTTTTCTCTTTTGTTTCAATGTCAATTCGGTGGATTCAGATGATGGAGCAACGTTGTTGGAGATAAAGAAGTCATTCAGGGATGTGGATAACGTTCTATATGACTGGACAGACTCACCATCATCAGATTATTGTGTCTGGAGAGGGGTCACATGTGATAATGTCACCTTCAATGTCGTTGCTCTCAATCTTTCAGGATTGAATATTGAGGGCGAAATTTCACCTGCAATAGGGAGCCTTAACAACTTGATCTTTATTGATCTCAAGGAAAACCGTCTATCTGGTCAGATACCAGATGAGATTGGTGACTGTTCTTCTTTGAGAAGCCTGGACTTGTCATTTAATGATATTCGGGGAGATATACCATTTTCAATTTCAAAGCTGAAACAACTGGAAAATCTAATTTTGAAAAATAACCAGCTAATTGGACCTATTCCTTCAACTCTGTCTCAGATTCCTAACTTGAAGATTCTAGATCTGGCACAAAATAATCTTAGCGGGGAGATACCAAGACTTATATACTGGAATGAAATTTTGCAATATCTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTTGATGTGAGAAACAACAGCTTGACAGGCAGTATTCCTGAGAACATAGGCAATTGTACTTCCTTCCAGGTCTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTTCTGCAAATAGCGACCCTGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATTGGTTATTGGTCTGATGCAAGCACTTGCTGTCTTAGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGCCACATCCCCCCGGAGCTTGGAAATATGACAAAGCTTCACTATTTGGAATTGAATGATAACCAATTAAGTGGACATATTCCACCCGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTTGCTAACAACAACCTTGAGGGTCAAGTTCCAGATAATATTAGCTCGTGTAAAAATCTTAACAGCCTCAATGTGCATGGAAATAAGTTGAGTGGAACAGTCCCCTCAGCTTTTCAGAGCTTGGAGAGTATGACCTATTTGAATCTTTCTTCCAACTATCTTCAAGGCTCAATTCCTATTGAACTGTCACAGATTGGTAATTTGGATACACTGGATATTTCAAATAATAATTTAAGTGGTTCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAACTGAATCTGAGCAGAAATCATTTAACGGGGTTTATTCCAGCAGAATTTGGTAATCTAAGAAGCGTCATGGAAGTCGATCTTTCAAATAATCACCTCACTGGCTTGATTCCTCTAGAACTCAGCCAGCTTCAGAACATGATATCCTTGAGACTAGAAAACAACAAATTGTCTGGGGACGTGACATCACTTGAAAATTGCCTTAGTCTTTCTCTGCTTAATGTCTCCTATAACAACCTGATTGGTGTTATTCCCACAAGCAACAATTTTTCCAGGTTTTCCCCTGACAGTTTCATTGGAAACCCTGGTCTTTGTTGTTATTGCCTGAATTCGCATTGTCATGGGACTCACCCTGCAGAACGAGTTATGTCGTCTAAGTCAGCTATTCTGGGAATTGCTCTTACTGCTCTTGTGATTCTTCTTATGATATTGCTGGCAGCTCGCCTACCATACAATTCATCTCGTTTTCCCGACGGATCATTTGCCAAACCAGTTAATTACTCCCCACCAAAGCTAGTGATTCTTCACATGAATATGGCGCTTCATGTATATGATGATATCATGAGAATGACAGAAAACCTTAGTGAGAAATATATAATTGGATATGGTGCATCAAGTGCAGTCTATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAGGCTCTATTCTCACTATCCACAATACATGAAAGAATTTGAGACTGAACTTGAGACAGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTTTATCTCCGTATGGAAACCTTCTCTTTTTTGACTACATGGAAAATGGCAGTCTATGGGATCTCCTTCATGGACCTACCAAGAAGAAAAGGCTTGATTGGGATCTTCGTCTAAAAATAGCACTTGGAGCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCACGTATCATTCACAGGGATGTTAAATCACCTAATATTTTATTAGACAAAAACTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGTCTATGCCCCTCAAAGTCCCACACTTCAACTTTTATAATGGGCACAATTGGCTATATAGATCCTGAGTATGCCAGAACTGCACGTCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATTGTATTACTTGAGCTATTAACAGGGAGAAAAGCTGTTGACAACGAATCAAACCTTCATCATATGATTTTGTCCAAGACAGCTAATGATGAGGTAATGGAAACTGTTGATCCGGATATTACAGCCTCATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTATGCACAAAGAGTCAGCCAGTTGATAGACCTACAATGCATGAGGTGACACGTGTACTGGGAAGTCTTGTGCCATGCATCACTCCACCAATACAAGCACTAACTGATTCACAATCATATGCTAAAGTGCAATGCTACAAGGATGATGATGAGTATGCAAATCTTAAAACTCCATCCATGAGCACCTCTGATGCCCACCTCTTCCTTAAGTTTGGAGAGGTAATCTCTCAAAACAGTGCGTGA 2922 0.4035 MAFRCELLLLVFLFCFNVNSVDSDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCVWRGVTCDNVTFNVVALNLSGLNIEGEISPAIGSLNNLIFIDLKENRLSGQIPDEIGDCSSLRSLDLSFNDIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEILQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTSFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPLVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGHIPPELGNMTKLHYLELNDNQLSGHIPPELGKLTDLFDLNVANNNLEGQVPDNISSCKNLNSLNVHGNKLSGTVPSAFQSLESMTYLNLSSNYLQGSIPIELSQIGNLDTLDISNNNLSGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEVDLSNNHLTGLIPLELSQLQNMISLRLENNKLSGDVTSLENCLSLSLLNVSYNNLIGVIPTSNNFSRFSPDSFIGNPGLCCYCLNSHCHGTHPAERVMSSKSAILGIALTALVILLMILLAARLPYNSSRFPDGSFAKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSAVYKCVLKNCKPVAIKRLYSHYPQYMKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFFDYMENGSLWDLLHGPTKKKRLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSPNILLDKNFEPHLTDFGIAKSLCPSKSHTSTFIMGTIGYIDPEYARTARLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHMILSKTANDEVMETVDPDITASCKDMGAVKKVFQLALLCTKSQPVDRPTMHEVTRVLGSLVPCITPPIQALTDSQSYAKVQCYKDDDEYANLKTPSMSTSDAHLFLKFGEVISQNSA 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00091 973 Gene3D Transferase(Phosphotransferase) domain 1 723 920 - -
Gabi3450g00091 973 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
Gabi3450g00091 973 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 723 923 - -
Gabi3450g00091 973 SMART LRR_typ_2 401 425 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 497 524 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 329 353 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 473 496 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 210 234 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 377 400 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 449 472 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 162 186 IPR003591 -
Gabi3450g00091 973 SMART LRR_typ_2 90 114 IPR003591 -
Gabi3450g00091 973 SUPERFAMILY RNI-like 203 538 - -
Gabi3450g00091 973 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00091 973 SMART serkin_6 647 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00091 973 Gene3D Ribonuclease Inhibitor 22 187 IPR032675 -
Gabi3450g00091 973 SUPERFAMILY L domain-like 48 257 - -
Gabi3450g00091 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 161 914 - -
Gabi3450g00091 973 Gene3D Ribonuclease Inhibitor 188 276 IPR032675 -
Gabi3450g00091 973 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Gabi3450g00091 973 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Gabi3450g00091 973 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 618 722 - -
Gabi3450g00091 973 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Gabi3450g00091 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Gabi3450g00091 973 Pfam Leucine Rich Repeat 452 473 IPR001611 GO:0005515
Gabi3450g00091 973 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Gabi3450g00091 973 Pfam Leucine rich repeat 379 438 IPR001611 GO:0005515
Gabi3450g00091 973 SUPERFAMILY Protein kinase-like (PK-like) 624 913 IPR011009 -
Gabi3450g00091 973 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Gabi3450g00091 973 ProSiteProfiles Protein kinase domain profile. 647 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00091 973 Gene3D Ribonuclease Inhibitor 280 569 IPR032675 -
Gabi3450g00091 973 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Gabi3450g00091 973 Gene3D Phosphorylase Kinase; domain 1 620 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00091 Gabi-Chr3450 707410 715349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00091 92 972 Receptor kinase-like Gene Family AT5G07180 65.306 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gabi3450g00091 Pkinase 8.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00091 K20718 - gmx:100804875 1665.59