Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00090 ATGATGGCAACTCATCTGCTAAGGCTTTCTCTCTCTCCGCAACCGAAGCTCTGCTTCGTTTCCACAGCCAATCACGATGTCCACTTCGTTTCTCTGCTTCCGCCAAAACGACGTCGCAACCGCAACCGCCACCGCCGGGAAAAGTTTTGGCCAAATTTCGTCGTTTCAAACTGCTTTGGAACTGAGATTAGCTCACCGGAATCAGATCTTCTTCAAGTCCGGGAACAGAATAAAGACTCGCCGGTTCTACTCGATGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAACACATCTTGTCCGCTGACGACCGAGTCGACTCGGCCGTGGTCAACATGTTGACCGAGACAGCCGCCGTTAAGTTGAGACGGAACGAGGAGGAACCGGCGAGCGTCGCGGAAAGCCTTGCTCGGAGATTGAGCGATTGCGGGTTTCCGACAAAGAGGAGGGCGTCGGGTTTGGGAGTGGCAGAAAATGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAACTAGTCGCCAAGAGTCGAAACCGCGTCGCTTTCGCTTGGACTTTGGTGGCATTGTGCTGTGGATCTCATGCTTCGCATATTTTTCACTCTTTGGGGATTCACATTGGTCATGGACCGCTTTGGAAAATACTTCATAATTCATACGTGAAAGGTGGGTTATCTTTGGGCGCTCTATTGGGACCGGGACGAGAGTTACTCTTTGATGGGCTGAACGCATTTAAGAAGGGATCGCCAAATATGAACTCTCTTGTGGGATTTGGTTCCATAGCTGCTTTCATCATCAGTTCGATCTCACTACTTAACCCTGGGCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTTGGACGTTCTCTGGAGGAAAAGGCGAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTTCACTGATATCTACGCAGTCAAGACTTGTGATTACTTCGTCAGAAGGTTCACCATCTACTGACAGTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTTGGTGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCATTTCCGGAAGAAGCGTTGTGGATGAATCCATGCTTACAGGAGAATCACTTCCTGTGTTTAAGGAGGAAGGCCTCCCAGTTTCAGCAGGAACTATAAATTGGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCGGGGCCATTTGTATACAGTGTAATGACTCTGTCAGCGGCAACATTTGCATTCTGGTATTTTATTGGATCACACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGCTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCTCTGGGTCTTGCCACACCCACAGCGATCCTGGTTGGCACATCACTTGGGGCAAGGAAAGGACTTCTTATTAGAGGAGGGGATGTGCTGGAACGCTTGGCAAGTATAAATTATATTGCTCTAGACAAGACAGGAACCCTCACCAGAGGTAAACCAGTTGTGTCTGCCATAGGCTCTATTGATTATAGACAGTCAGAAATTCTTCAGATTGCTGCTGCCGTTGAGAAAACAGCATCTCATCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCGTTGGAGCTGGTCCTTCCAGTAACAAAAAGGCAGTTAGTTGAACCAGGTTTTGGAACCATGGCAGAAATAGATGGGCGTTTGGTTGCAGTTGGATCTTTAGAATGGGTTCATGAACGCTTCCACACAAAAATGAGCCCATCTGATTTGATGAATCTGGAACAAAATTTGATGAATCATTCGTCGAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATGGGTGCTATTTCCATATCTGACATTGTGCGCGATGATGCTCAATCTACTGTAATGAGGCTCAAGCAGAAGGGGATTAAAATGGCCCTCTTATCCGGAGACAGGGAAGAAGCAGTTGCAACAATAGCAAAAACAGTTGGAATTGAAAGTGATTTTGTCAAAGCATCTTTGTCTCCACAGCAGAAATCTGGATTTATTTCATCTCTGAAAGCTGCTGGATATAATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCGGATGTTGGGATTGCTCTGCAGAATGAAGCACAAGAGAATGCTGCCTCGGATGCAGCATCCATTATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCACTAGACCTTGCACAGACAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCAGTAGCCTACAATGCTGTTGCCATTCCCATTGCTGCTGGCGTGTTACTTCCCCAATTCGACTTTGCTATGACACCTTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGACCTCCACAAAGGGCTCACTCTAA 2595 0.4655 MMATHLLRLSLSPQPKLCFVSTANHDVHFVSLLPPKRRRNRNRHRREKFWPNFVVSNCFGTEISSPESDLLQVREQNKDSPVLLDVTGMMCGACVSRVKHILSADDRVDSAVVNMLTETAAVKLRRNEEEPASVAESLARRLSDCGFPTKRRASGLGVAENVRKWKELVKKKEELVAKSRNRVAFAWTLVALCCGSHASHIFHSLGIHIGHGPLWKILHNSYVKGGLSLGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSPSTDSVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEEGLPVSAGTINWVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFIGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTRGKPVVSAIGSIDYRQSEILQIAAAVEKTASHPIAKAIVNKAESLELVLPVTKRQLVEPGFGTMAEIDGRLVAVGSLEWVHERFHTKMSPSDLMNLEQNLMNHSSNTTSSKYSKTVVYVGREGEGIMGAISISDIVRDDAQSTVMRLKQKGIKMALLSGDREEAVATIAKTVGIESDFVKASLSPQQKSGFISSLKAAGYNVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQTTMAKVYQNLSWAVAYNAVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQTSTKGSL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00090 864 Gene3D - 73 153 - -
Gabi3450g00090 864 Coils Coil 162 182 - -
Gabi3450g00090 864 SFLD p-type atpase 510 792 IPR044492 -
Gabi3450g00090 864 Gene3D - 306 423 - -
Gabi3450g00090 864 SUPERFAMILY HMA, heavy metal-associated domain 81 139 IPR036163 GO:0046872
Gabi3450g00090 864 FunFam Copper-transporting ATPase PAA2, chloroplastic 538 671 - -
Gabi3450g00090 864 NCBIfam heavy metal translocating P-type ATPase 407 851 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3450g00090 864 PRINTS P-type cation-transporting ATPase superfamily signature 527 541 - -
Gabi3450g00090 864 PRINTS P-type cation-transporting ATPase superfamily signature 663 674 - -
Gabi3450g00090 864 PRINTS P-type cation-transporting ATPase superfamily signature 740 759 - -
Gabi3450g00090 864 PRINTS P-type cation-transporting ATPase superfamily signature 685 695 - -
Gabi3450g00090 864 PRINTS P-type cation-transporting ATPase superfamily signature 383 397 - -
Gabi3450g00090 864 SUPERFAMILY Calcium ATPase, transmembrane domain M 283 521 IPR023298 -
Gabi3450g00090 864 ProSiteProfiles Heavy-metal-associated domain profile. 80 150 IPR006121 GO:0046872
Gabi3450g00090 864 SFLD Haloacid Dehalogenase 510 792 - -
Gabi3450g00090 864 SUPERFAMILY HAD-like 525 848 IPR036412 -
Gabi3450g00090 864 CDD P-type_ATPase_HM 182 850 - -
Gabi3450g00090 864 Pfam haloacid dehalogenase-like hydrolase 523 754 - -
Gabi3450g00090 864 CDD HMA 84 148 IPR006121 GO:0046872
Gabi3450g00090 864 Pfam Heavy-metal-associated domain 84 147 IPR006121 GO:0046872
Gabi3450g00090 864 ProSitePatterns E1-E2 ATPases phosphorylation site. 529 535 IPR018303 -
Gabi3450g00090 864 Gene3D - 518 791 IPR023214 -
Gabi3450g00090 864 PANTHER ATP7, ISOFORM B 409 853 - -
Gabi3450g00090 864 NCBIfam HAD-IC family P-type ATPase 337 832 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3450g00090 864 Pfam E1-E2 ATPase 409 507 - -
Gabi3450g00090 864 Pfam E1-E2 ATPase 341 408 - -
Gabi3450g00090 864 FunFam Copper-transporting ATPase PAA2 chloroplastic 79 152 - -
Gabi3450g00090 864 Gene3D - 538 671 IPR023299 GO:0000166
Gabi3450g00090 864 SUPERFAMILY Calcium ATPase, transduction domain A 344 409 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00090 Gabi-Chr3450 687925 700140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00090 245 852 Primary Pumps ATPases AT1G63440 35.826 7.03e-104 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00090 K17686 - gmx:100127402 1401.73