Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00089 ATGATGGCAACTCATCTGCTAAGGCTTTCTCTCTCTCCGCAACCGAAGCTCTGCTTCGTTTCCACAGCCAATCACGATGTCCACTTCGTTTCTCTGCTTCCGCCAAAACGACGTCGCAACCGCAACCGCCACCGCCGGGAAAAGTTTTGGCCAAATTTCGTCGTTTCAAACTGCTTTGGAACTGAGATTAGCTCACCGGAATCAGATCTTCTTCAAGTCCGGGAACAGAATAAAGACTCGCCGGTTCTACTCGATGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAACACATCTTGTCCGCTGACGACCGAGTCGACTCGGCCGTGGTCAACATGTTGACCGAGACAGCCGCCGTTAAGTTGAGACGGAACGAGGAGGAACCGGCGAGCGTCGCGGAAAGCCTTGCTCGGAGATTGAGCGATTGCGGGTTTCCGACAAAGAGGAGGGCGTCGGGTTTGGGAGTGGCAGAAAATGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAACTAGTCGCCAAGAGTCGAAACCGCGTCGCTTTCGCTTGGACTTTGGTGGCATTGTGCTGTGGATCTCATGCTTCGCATATTTTTCACTCTTTGGGGATTCACATTGGTCATGGACCGCTTTGGAAAATACTTCATAATTCATACGTGAAAGGTGGGTTATCTTTGGGCGCTCTATTGGGACCGGGACGAGAGTTACTCTTTGATGGGCTGAACGCATTTAAGAAGGGATCGCCAAATATGAACTCTCTTGTGGGATTTGGTTCCATAGCTGCTTTCATCATCAGTTCGATCTCACTACTTAACCCTGGGCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTTGGACGTTCTCTGGAGGAAAAGGCGAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTTCACTGATATCTACGCAGTCAAGACTTGTGATTACTTCGTCAGAAGGTTCACCATCTACTGACAGTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTTGGTGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCATTTCCGGAAGAAGCGTTGTGGATGAATCCATGCTTACAGGAGAATCACTTCCTGTGTTTAAGGAGGAAGGCCTCCCAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCGGGGCCATTTGTATACAGTGTAATGACTCTGTCAGCGGCAACATTTGCATTCTGGTATTTTATTGGATCACACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGCTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCTCTGGGTCTTGCCACACCCACAGCGATCCTGGTTGGCACATCACTTGGGGCAAGGAAAGGACTTCTTATTAGAGGAGGGGATGTGCTGGAACGCTTGGCAAGTATAAATTATATTGCTCTAGACAAGACAGGAACCCTCACCAGAGGTAAACCAGTTGTGTCTGCCATAGGCTCTATTGATTATAGACAGTCAGAAATTCTTCAGATTGCTGCTGCCGTTGAGAAAACAGCATCTCATCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCGTTGGAGCTGGTCCTTCCAGTAACAAAAAGGCAGTTAGTTGAACCAGGTTTTGGAACCATGGCAGAAATAGATGGGCGTTTGGTTGCAGTTGGATCTTTAGAATGGGTTCATGAACGCTTCCACACAAAAATGAGCCCATCTGATTTGATGAATCTGGAACAAAATTTGATGAATCATTCGTCGAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATGGGTGCTATTTCCATATCTGACATTGTGCGCGATGATGCTCAATCTACTGTAATGAGGCTCAAGCAGAAGGGGATTAAAATGGCCCTCTTATCCGGAGACAGGGAAGAAGCAGTTGCAACAATAGCAAAAACAGTTGGAATTGAAAGTGATTTTGTCAAAGCATCTTTGTCTCCACAGCAGAAATCTGGATTTATTTCATCTCTGAAAGCTGCTGGATATAATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCGGATGTTGGGATTGCTCTGCAGAATGAAGCACAAGAGAATGCTGCCTCGGATGCAGCATCCATTATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCACTAGACCTTGCACAGACAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCAGTAGCCTACAATGCTGTTGCCATTCCCATTGCTGCTGGCGTGTTACTTCCCCAATTCGACTTTGCTATGACACCTTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGACCTCCACAAAGGGCTCACTCTAA 2664 0.4643 MMATHLLRLSLSPQPKLCFVSTANHDVHFVSLLPPKRRRNRNRHRREKFWPNFVVSNCFGTEISSPESDLLQVREQNKDSPVLLDVTGMMCGACVSRVKHILSADDRVDSAVVNMLTETAAVKLRRNEEEPASVAESLARRLSDCGFPTKRRASGLGVAENVRKWKELVKKKEELVAKSRNRVAFAWTLVALCCGSHASHIFHSLGIHIGHGPLWKILHNSYVKGGLSLGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSPSTDSVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEEGLPVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFIGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTRGKPVVSAIGSIDYRQSEILQIAAAVEKTASHPIAKAIVNKAESLELVLPVTKRQLVEPGFGTMAEIDGRLVAVGSLEWVHERFHTKMSPSDLMNLEQNLMNHSSNTTSSKYSKTVVYVGREGEGIMGAISISDIVRDDAQSTVMRLKQKGIKMALLSGDREEAVATIAKTVGIESDFVKASLSPQQKSGFISSLKAAGYNVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQTTMAKVYQNLSWAVAYNAVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQTSTKGSL 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00089 887 Gene3D - 306 437 - -
Gabi3450g00089 887 SUPERFAMILY HAD-like 548 871 IPR036412 -
Gabi3450g00089 887 Coils Coil 162 182 - -
Gabi3450g00089 887 Gene3D - 561 694 IPR023299 GO:0000166
Gabi3450g00089 887 Pfam haloacid dehalogenase-like hydrolase 546 777 - -
Gabi3450g00089 887 ProSitePatterns E1-E2 ATPases phosphorylation site. 552 558 IPR018303 -
Gabi3450g00089 887 SUPERFAMILY Calcium ATPase, transmembrane domain M 283 544 IPR023298 -
Gabi3450g00089 887 NCBIfam heavy metal translocating P-type ATPase 254 874 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3450g00089 887 FunFam Copper-transporting ATPase PAA2 chloroplastic 79 152 - -
Gabi3450g00089 887 ProSiteProfiles Heavy-metal-associated domain profile. 80 150 IPR006121 GO:0046872
Gabi3450g00089 887 FunFam Copper-transporting ATPase PAA2, chloroplastic 561 694 - -
Gabi3450g00089 887 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Gabi3450g00089 887 PRINTS P-type cation-transporting ATPase superfamily signature 383 397 - -
Gabi3450g00089 887 PRINTS P-type cation-transporting ATPase superfamily signature 763 782 - -
Gabi3450g00089 887 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Gabi3450g00089 887 PRINTS P-type cation-transporting ATPase superfamily signature 550 564 - -
Gabi3450g00089 887 Pfam E1-E2 ATPase 341 530 - -
Gabi3450g00089 887 SFLD p-type atpase 533 815 IPR044492 -
Gabi3450g00089 887 CDD HMA 84 148 IPR006121 GO:0046872
Gabi3450g00089 887 FunFam Copper-transporting ATPase 1, putative 306 437 - -
Gabi3450g00089 887 PANTHER ATP7, ISOFORM B 74 876 - -
Gabi3450g00089 887 SUPERFAMILY HMA, heavy metal-associated domain 81 139 IPR036163 GO:0046872
Gabi3450g00089 887 NCBIfam HAD-IC family P-type ATPase 336 855 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3450g00089 887 CDD P-type_ATPase_HM 182 873 - -
Gabi3450g00089 887 SFLD C1.7: P-type atpase like 533 815 - -
Gabi3450g00089 887 SUPERFAMILY Calcium ATPase, transduction domain A 344 433 IPR008250 -
Gabi3450g00089 887 Gene3D - 73 153 - -
Gabi3450g00089 887 Gene3D - 541 814 IPR023214 -
Gabi3450g00089 887 Pfam Heavy-metal-associated domain 84 147 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00089 Gabi-Chr3450 687925 700140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00089 245 875 Primary Pumps ATPases AT1G63440 36.916 2.53e-114 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00089 K17686 - gmx:100127402 1457.58