LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3450g00080	ATGGATGCTAATAAGCATGAAGCTCCAAAAGGTGGCGAAGTAAGCATGTTGCAGAAGAAAAGAGAAGTTGTTTTGGTGATTCCAAATATGGGTGGAGAGAACCATGACTTGAAAGGGGTTGATTCACCTCACAGAATAAGCAACGACAACGAGCTTTCTTCAAAGTCTCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCGTGCCAAGCCCAAATAAGCCACCCAAAGTTCCCACTTCAAATTCCAACCTTTCCCGCAGAAAATCATTCGCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTGGTCCCATTGATGGGATCATTTTAGAAGAGGATAGTACTTCAACTTTGCAAGAACAATTTGTTGTTAGTTCCCCATATAGGAACTCGCCCAATAACAAATCCGGGCCGGTTAATAGAACCGTTTCCATCACTTCTAACATCACTCCCAAGACACCGTTGATGGCTGGGGAGGATCAGGATGAAATCATTTACAGGAAAGTTGAATTGAGTAAAAGCAAGCGTAAGAGACTGAAAACTAAGGTTTTGATTGAATGGTTTGTGTTTGTGTGCATTGTGGGTAGCTTGCTTGCTAGTTTAACAGTTGACAAACTGAAAAAGACAAAGATTGGGGGTTTGGGGTTATGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTTTTGTTGAGGAAAAAGGTTCTGTATTTTGTCCATGGACTGAAGAAATGTGTCAAGGTCTGCATTTGGCTTAGTTTGGTTCTTCTCACATGGGTGCTGTTAATCAATCGTGGGGTCCAGCGATCTGAATTGGGGACTAAAATTTTGGATGGTATAACGTGGAGTCTTGTTTCCCTTCTCATTGGAGCATTGCTGTGGTTCATAAAGACATTGTTGCTAAAGATGTTGGCATCACAATTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCAATCTTTCATCAGTACGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGAAGAGGCTGAGAATGTTGGGGGATCACAAAGTATTGGTCATTTCAGTTTTAGGAGTACAAATGGTAAAGGTGACACAAAGAAAGGGGTTATTGATATGGCAAAGCTTCACAGAATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGATTTTGGTAGATGCAGTGATAAATTCAGGGCTATCTACAATCTCTAGTTCACTAGATGAAACTTTCGATGATGGAGGAAATGAACAAACTGATAAAGAGATAACAAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCTGCCCCTTGTTGCACGTACATTGATGAGTACGAACTCCGGAGGTTCATGATTATGGAAGAGGTTCACCTGGTATTTCCTCTACTGGCCCAAGCAGACACGGGGCAAATCACCAGAAAGTCTTTAACAGACTGGGTGTTGAAGGTATATCAAGAGCGTAAAGCATTGGCACATGCCTTAAGCGACACCAAAACAGCTGTAAAGCAATTGAACAATCTTGTGTCCGGGATCCTAGTAGTGGTAACTATAATAGTGTGGCTTCTACTAATGGAGATTGCTACAACAAAAGTACTTGTATTCCTTTCATCGCAGCTATTGCTTGCAGGCTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTCTCATCTTCGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTGTAGACGGTGAACAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCCTAATAATGAAAAGGTGTATTTTCCTAACTCTATCCTGGCCTCAAAACCTATTAGCAATTATTACAGAAGCCCAGATATGGGTGACAGTGTAGAGTTCTCCATTGATTTTATGACACCAGTGGAGAAGGTTGGGGCACTGAAAGAAAAAATAAACAGGTACTTGGAAAGAACTCCACAATACTGGCATCCTAATTACAACTTAGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTCTTTGTTACCCACAAAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGGAGAACTGAACTGCTGCTGGAAATTAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGTGTTCATCTAAGACATATGGAACCAGATTCGAGTGGACTCAGTAGATGA	2283	0.4065	MDANKHEAPKGGEVSMLQKKREVVLVIPNMGGENHDLKGVDSPHRISNDNELSSKSPPLNCASPEIRFVPSPNKPPKVPTSNSNLSRRKSFARSVYSKPKSRFGEQPGPIDGIILEEDSTSTLQEQFVVSSPYRNSPNNKSGPVNRTVSITSNITPKTPLMAGEDQDEIIYRKVELSKSKRKRLKTKVLIEWFVFVCIVGSLLASLTVDKLKKTKIGGLGLWRWCVLVMVTFCGMLVTKWFMHIVVFLIEMNFLLRKKVLYFVHGLKKCVKVCIWLSLVLLTWVLLINRGVQRSELGTKILDGITWSLVSLLIGALLWFIKTLLLKMLASQFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAENVGGSQSIGHFSFRSTNGKGDTKKGVIDMAKLHRMKQEKVSAWTMKILVDAVINSGLSTISSSLDETFDDGGNEQTDKEITNEMEATAAAYYIFRNVAAPCCTYIDEYELRRFMIMEEVHLVFPLLAQADTGQITRKSLTDWVLKVYQERKALAHALSDTKTAVKQLNNLVSGILVVVTIIVWLLLMEIATTKVLVFLSSQLLLAGFMFGNTCKNIFEALIFVFVMHPFDVGDRCVVDGEQLLVEEMNILTTVFLKPNNEKVYFPNSILASKPISNYYRSPDMGDSVEFSIDFMTPVEKVGALKEKINRYLERTPQYWHPNYNLVVKEIENVNKIKMGLFVTHKMNFQEFGEKNKRRTELLLEIKKIFEELNIRYNLLPQGVHLRHMEPDSSGLSR	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3450g00080	760	SUPERFAMILY	Sm-like ribonucleoproteins	582	641	IPR010920	-
	Gabi3450g00080	760	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	47	753	IPR016688	-
	Gabi3450g00080	760	Pfam	Mechanosensitive ion channel	533	738	IPR006685	GO:0016020\|GO:0055085
	Gabi3450g00080	760	Gene3D	-	592	641	IPR023408	-
	Gabi3450g00080	760	MobiDBLite	consensus disorder prediction	31	90	-	-
	Gabi3450g00080	760	MobiDBLite	consensus disorder prediction	46	60	-	-
	Gabi3450g00080	760	PIRSF	Memb_At2g17000	31	759	IPR016688	-
	Gabi3450g00080	760	FunFam	Predicted mechanosensitive ion channel	592	641	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3450g00080	Gabi-Chr3450	607731	610466	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3450g00080	54	748	Mechanosensitive Ion Channel Family	AT5G12080	60.372	0.0	847

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3450g00080	K22048		-	gmx:100803107	1168.68