Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00079 ATGAGCATGAGTCACAGCCCTCAAAGTCGGCATAACCTTTCTCGGCAGTCATCGTCCAAGTCGAATTCGGGGACAAAGCAAGAACCACTTAGCCCTATACCTAGTGGATGCTGTCGAGGCTTCAGCAGCGTTAGGACTGTGGAATCGACCACATCAACCTTGCAACAGCATCAGCTCCAGCATCGTTGTGAAAAATTGGAAGGAAAGGTGGCAGGTTTGGAAAAGGAGGTGCAAAGGCAGACAGAACTTCGAGTCATGTATAGGAAAAGACTGGAACGGACGCAAGATTACTTAAGGTACTGCCTCCAAATAGCACAGGAAAATGGAATATTGGACCTCATTAACCACTCCAAAGGTGGACTCCAACACTCTCCTCTCTCTATCCACACCGTCAACTCCGCCACCACCAGTCCTCAAATTTTCACTCCTGCGAACCATCACCCCAATCTAGCGGCCGTCATTGATCAAGCTAAAATCAATGGCTGGTATATAAATCCAATTGAGATTCAGTTGGAAGAGAAAATAGGGCAGGGAACCACGGCAGACATTCATAGGGGAACATGGCGCGGATTTGATGTGGCGGTAAAGTGCATGTCTACTGAATTCTTCAGCACAAATGCAAACGGTGTTACATTCTTCGCTCAAGAGGTTGAAACTCTCTCAAAGCAACGCCACCGGTTTGTGCTTCAACTTATGGGTGCGTGCCTTGAGCCTCCTCATCATGCATGGGTTGTTACCGAGTATCTAAGCACCACGCTCAAAGAGTGGCTATTTGGCCCTGGCAAAAGGTGCAAAGATAGAATTGTGCCACTTCCACCTTTCAAAGACAGAGTGATGATGGCCTTAGAGATAGCCCAAGCCATGCAATATCTTCATGAACAAAAGCCCAAAGTTATTCATCGTGACTTGAAGCCCAGCAACATTTTCTTGGACGATGCCATGCATGTTAGAGTAGCTGATTTTGGACATGCCCGTTTCTTGGACGACGAGGAAATGGCTCTCACTGGAGAAACAGGAACATACGTGTATATGGCACCAGAGGTGATCCGATGTGAGCCCTATAATGAAAAATGTGATGTATATAGTTTCGGTGTCATATTTAACGAGCTTCTAACTGGAAACTACCCCTACATTGAAACAGAATATGGTCCCCTCAAGATTGCTATGGAAGTAGTGGAGGGTAAGCTGCGTCCTATGCTTCCATCACAGGATGATGGTTTCCAACTGGAAGAGCTGATTGACTTGATATGCCTTTGCTGGGATGGAAATCCATCTACTCGACCATCCTTCTCAACAATTAACAGTAGCCTCAAAAGTTACGTCAAGAAAGTCCTTCAAAGTTCAAACTAG 1350 0.4607 MSMSHSPQSRHNLSRQSSSKSNSGTKQEPLSPIPSGCCRGFSSVRTVESTTSTLQQHQLQHRCEKLEGKVAGLEKEVQRQTELRVMYRKRLERTQDYLRYCLQIAQENGILDLINHSKGGLQHSPLSIHTVNSATTSPQIFTPANHHPNLAAVIDQAKINGWYINPIEIQLEEKIGQGTTADIHRGTWRGFDVAVKCMSTEFFSTNANGVTFFAQEVETLSKQRHRFVLQLMGACLEPPHHAWVVTEYLSTTLKEWLFGPGKRCKDRIVPLPPFKDRVMMALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDAMHVRVADFGHARFLDDEEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGVIFNELLTGNYPYIETEYGPLKIAMEVVEGKLRPMLPSQDDGFQLEELIDLICLCWDGNPSTRPSFSTINSSLKSYVKKVLQSSN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00079 449 SMART serkin_6 169 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00079 449 SUPERFAMILY Protein kinase-like (PK-like) 151 434 IPR011009 -
Gabi3450g00079 449 Pfam Protein kinase domain 170 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00079 449 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 38 437 - -
Gabi3450g00079 449 Gene3D Phosphorylase Kinase; domain 1 151 250 - -
Gabi3450g00079 449 ProSiteProfiles Protein kinase domain profile. 169 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00079 449 CDD STKc_MAP3K-like 175 433 - -
Gabi3450g00079 449 Gene3D Transferase(Phosphotransferase) domain 1 271 449 - -
Gabi3450g00079 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Gabi3450g00079 449 MobiDBLite consensus disorder prediction 1 37 - -
Gabi3450g00079 449 Coils Coil 56 83 - -
Gabi3450g00079 449 PIRSF ILK 2 82 - -
Gabi3450g00079 449 PIRSF ILK 120 449 - -
Gabi3450g00079 449 ProSitePatterns Protein kinases ATP-binding region signature. 175 196 IPR017441 GO:0005524
Gabi3450g00079 449 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00079 Gabi-Chr3450 591517 596028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00079 160 444 MAP Kinase Kinase Kinase AT2G17700 36.140 1.54e-49 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Gabi3450g00079 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00079 - - gmx:100810435 711.064