Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00076 ATGGGGGATCCCAGGTTTGCTGTTCCATATAATGACCCATATGACGCTCCAATGAGCCCGAGCTTTTTCAATTTCAGCAACCCCACACTAGCCGATTTAACCTTTAATGATGGAGCCAGTGCAGCACTACCCCCCCAACAAAGTGATTTTCATCATGGAGTTCAACAGGGTAATGATGGAGCCACTGCATTGCCCCAACAACAAAGTTTTTATCCTGGAGGTCAACAGGGTAATACTGCACTCACCCATCAAAGTTATCATGGAGTTCAACAGGGAAATAATGATCTTACCTATTCGGAATTTGATCCAATGATTCAAGATAACTTGGTGTATAATAATTTTCCCTATGGAGGAGCAGAGAACTTTGAAGCGGGTTCATCACAAATGCATGTGAATATGGATCAAAGTCAGCAGACAAATGAGAATTTGGGGTCTCAGAATCCCAACCAAGTAATGGCACTTGCTGCGTATTGGCCCCAAACACAAGCCCCCTTTTTTTGCAGTTGCTGTCATGTCCTGAGAGAAATAGTTTACACTAATGGTATTAACTTCGAAAAGCTTGAGATACACGGAAGGCTCGGGATTGTTACCCATGCAATTCACTATAAGAATATCACGAATGGGGGCCCTTCTTCAAGCAACCATCAATATGAAATGATTGATTTTTGTAGTAGAAGCATTAATGAAGTCAAGCATTTCCTAGTAGAGTACTGTCAGGGGAAAACTAAAACAGGCTACACTATTTTGCAAGAACATCTCTCTGTCTATTATGAGGCCCTCTGCGTTGGACTAGACTGGACTGATGATCTAAATGATGACTTCACTGATTTGAATCCATCAGGAGGAGCACAAGCTGATGACATGGAACAAGAAGCTCCTAGACTTTGCCTAGCAGCACAGTTTTTGACTAGTTATCCTATTGTTTTTGGGCGCATTGCACAGAGGGAGAGAGCAGGAAGGATGACATTGAGTGATTTTAGCAATTACTTTCATTTACCTATTGACGAAGCAGCGAAACAAGTGAACTTATGCCCCACTGTCATGAAGAAAATTTGCCGTAAGGCAGGATTAGTTCGATGGCCTTTCAGAAAGGTTAAGAGCCTTTCGAAACAGATCTCAATACTCAGAAAAACATCATTAGAATCAGCAGATGCAGCCACAAAGGCAACAACTGAAGCGGAAATTAACAGACTTAAAGAAGAAATGATCCAGCATTGTGGTGGAATTGCGCCAACTGCATTAAATTTTGAGAATGCCAACCTATTATAG 1269 0.4177 MGDPRFAVPYNDPYDAPMSPSFFNFSNPTLADLTFNDGASAALPPQQSDFHHGVQQGNDGATALPQQQSFYPGGQQGNTALTHQSYHGVQQGNNDLTYSEFDPMIQDNLVYNNFPYGGAENFEAGSSQMHVNMDQSQQTNENLGSQNPNQVMALAAYWPQTQAPFFCSCCHVLREIVYTNGINFEKLEIHGRLGIVTHAIHYKNITNGGPSSSNHQYEMIDFCSRSINEVKHFLVEYCQGKTKTGYTILQEHLSVYYEALCVGLDWTDDLNDDFTDLNPSGGAQADDMEQEAPRLCLAAQFLTSYPIVFGRIAQRERAGRMTLSDFSNYFHLPIDEAAKQVNLCPTVMKKICRKAGLVRWPFRKVKSLSKQISILRKTSLESADAATKATTEAEINRLKEEMIQHCGGIAPTALNFENANLL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00076 422 PANTHER PROTEIN RKD4 144 404 IPR044607 GO:0003700
Gabi3450g00076 422 ProSiteProfiles RWP-RK domain profile. 308 389 IPR003035 -
Gabi3450g00076 422 Pfam RWP-RK domain 321 368 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00076 Gabi-Chr3450 559387 561561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00076 320 381 AtRKD Transcription Factor Family AT5G53040 41.935 5.36e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi3450g00076 RWP-RK 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00076 - - lang:109354161 335.109