Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00074 ATGGATGCAGGAGCTCCGTACAATCCTCGTACGGTGGAGGAGGTTTTCAGAGATTTCAAAGGGCGCAGAGCTGGCATGATTAAGGCCTTAACCACCGGTGTTGAAGAGTTCTTTCAGCAGTGTGATCCAGAGAAGGAAAATCTTTGCCTTTATGGTTTTCCTAGCGAGCACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATGCATGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCCGATAGGAAGCGACTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCCAAGAGGGGTTCTGAATCTCAAGTGAAGTATTCAAAAGCAATTCAACCGAAGGATGTGGATGAAGATGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGAAATACTCAGTGTGGGGCATGCGGAGAGTACTATGCGGCTAATGAATTTTGGATTTGCTGTGATATATGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCTAGGGCTGAACATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGTTAG 765 0.4497 MDAGAPYNPRTVEEVFRDFKGRRAGMIKALTTGVEEFFQQCDPEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESQVKYSKAIQPKDVDEDGLEEEDEEEHGNTQCGACGEYYAANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARPC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00074 254 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Gabi3450g00074 254 CDD PHD_AL_plant 199 249 IPR044104 -
Gabi3450g00074 254 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Gabi3450g00074 254 SMART PHD_3 199 247 IPR001965 -
Gabi3450g00074 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi3450g00074 254 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Gabi3450g00074 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Gabi3450g00074 254 FunFam PHD finger alfin-like protein 192 248 - -
Gabi3450g00074 254 Pfam PHD-finger 200 249 IPR019787 -
Gabi3450g00074 254 MobiDBLite consensus disorder prediction 150 174 - -
Gabi3450g00074 254 MobiDBLite consensus disorder prediction 145 198 - -
Gabi3450g00074 254 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00074 Gabi-Chr3450 543942 548994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00074 1 252 Alfin-like Transcription Factor Family AT3G42790 75.889 6.51e-124 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi3450g00074 Alfin 2.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00074 K26274 - pop:7476667 447.203