Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00073 ATGTGTTTCGAGAAGGAAAATCTTTGCCTTTATGGTTTTCCTAGCGAGCACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATGCATGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCCGATAGGAAGCGACTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCCAAGAGGGGTTCTGAATCTCAAGTGAAGTATTCAAAAGCAATTCAACCGAAGGATGTGGATGAAGATGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGAAATACTCAGTGTGGGGCATGCGGAGAGTACTATGCGGCTAATGAATTTTGGATTTGCTGTGATATATGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCTAGGGCTGAACATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGTTAG 645 0.4372 MCFEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESQVKYSKAIQPKDVDEDGLEEEDEEEHGNTQCGACGEYYAANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARPC 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00073 214 MobiDBLite consensus disorder prediction 110 134 - -
Gabi3450g00073 214 FunFam PHD finger alfin-like protein 152 208 - -
Gabi3450g00073 214 MobiDBLite consensus disorder prediction 105 158 - -
Gabi3450g00073 214 ProSitePatterns Zinc finger PHD-type signature. 160 206 IPR019786 -
Gabi3450g00073 214 Pfam PHD-finger 160 209 IPR019787 -
Gabi3450g00073 214 SUPERFAMILY FYVE/PHD zinc finger 149 210 IPR011011 -
Gabi3450g00073 214 Pfam Alfin 4 99 IPR021998 GO:0006355|GO:0042393
Gabi3450g00073 214 CDD PHD_AL_plant 159 209 IPR044104 -
Gabi3450g00073 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 208 IPR013083 -
Gabi3450g00073 214 PANTHER CPG BINDING PROTEIN 4 212 IPR045104 GO:0006355|GO:0042393
Gabi3450g00073 214 SMART PHD_3 159 207 IPR001965 -
Gabi3450g00073 214 ProSiteProfiles Zinc finger PHD-type profile. 157 209 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00073 Gabi-Chr3450 543942 550151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00073 4 212 Alfin-like Transcription Factor Family AT3G42790 76.555 1.87e-97 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi3450g00073 Alfin 4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00073 K26274 - mnt:21387296 369.007