Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00072 ATGGATGCAGGAGCTCCGTACAATCCTCGTACGGTGGAGGAGGTTTTCAGAGATTTCAAAGGGCGCAGAGCTGGCATGATTAAGGCCTTAACCACCGAGAAGGAAAATCTTTGCCTTTATGGTTTTCCTAGCGAGCACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATGCATGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCCGATAGGAAGCGACTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCCAAGAGGGGTTCTGAATCTCAAGTGAAGTATTCAAAAGCAATTCAACCGAAGGATGTGGATGAAGATGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGAAATACTCAGTGTGGGGCATGCGGAGAGTACTATGCGGCTAATGAATTTTGGATTTGCTGTGATATATGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCTAGGGCTGAACATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGTTAG 732 0.4495 MDAGAPYNPRTVEEVFRDFKGRRAGMIKALTTEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESQVKYSKAIQPKDVDEDGLEEEDEEEHGNTQCGACGEYYAANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARPC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00072 243 SUPERFAMILY FYVE/PHD zinc finger 178 239 IPR011011 -
Gabi3450g00072 243 PANTHER CPG BINDING PROTEIN 8 241 IPR045104 GO:0006355|GO:0042393
Gabi3450g00072 243 SMART PHD_3 188 236 IPR001965 -
Gabi3450g00072 243 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Gabi3450g00072 243 MobiDBLite consensus disorder prediction 139 163 - -
Gabi3450g00072 243 MobiDBLite consensus disorder prediction 134 187 - -
Gabi3450g00072 243 Pfam PHD-finger 189 238 IPR019787 -
Gabi3450g00072 243 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
Gabi3450g00072 243 CDD PHD_AL_plant 188 238 IPR044104 -
Gabi3450g00072 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 237 IPR013083 -
Gabi3450g00072 243 Pfam Alfin 11 128 IPR021998 GO:0006355|GO:0042393
Gabi3450g00072 243 FunFam PHD finger alfin-like protein 181 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00072 Gabi-Chr3450 543940 548994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00072 1 241 Alfin-like Transcription Factor Family AT3G42790 72.727 3.57e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi3450g00072 Alfin 4.8e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00072 K26274 - qsu:112019912 419.083