Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00071 ATGGATGCAGGAGCTCCGTACAATCCTCGTACGGTGGAGGAGGTTTTCAGAGATTTCAAAGGGCGCAGAGCTGGCATGATTAAGGCCTTAACCACCGGTGTTGAAGAGTTCTTTCAGCAGTGTGATCCAGAGAAGGAAAATCTTTGCCTTTATGGTTTTCCTAGCGAGCACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATGCATGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCCGATAGGAAGCGACTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCCAAGGTATGCAAGGGTTCTGAATCTCAAGTGAAGTATTCAAAAGCAATTCAACCGAAGGATGTGGATGAAGATGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGAAATACTCAGTGTGGGGCATGCGGAGAGTACTATGCGGCTAATGAATTTTGGATTTGCTGTGATATATGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCTAGGGCTGAACATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGTTAG 771 0.4488 MDAGAPYNPRTVEEVFRDFKGRRAGMIKALTTGVEEFFQQCDPEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKVCKGSESQVKYSKAIQPKDVDEDGLEEEDEEEHGNTQCGACGEYYAANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARPC 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00071 256 SMART PHD_3 201 249 IPR001965 -
Gabi3450g00071 256 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Gabi3450g00071 256 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi3450g00071 256 CDD PHD_AL_plant 201 251 IPR044104 -
Gabi3450g00071 256 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Gabi3450g00071 256 MobiDBLite consensus disorder prediction 150 176 - -
Gabi3450g00071 256 Pfam PHD-finger 202 251 IPR019787 -
Gabi3450g00071 256 FunFam PHD finger alfin-like protein 194 250 - -
Gabi3450g00071 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 250 IPR013083 -
Gabi3450g00071 256 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Gabi3450g00071 256 MobiDBLite consensus disorder prediction 145 177 - -
Gabi3450g00071 256 PANTHER CPG BINDING PROTEIN 8 254 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00071 Gabi-Chr3450 543932 548994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00071 1 254 Alfin-like Transcription Factor Family AT3G42790 75.686 2.11e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi3450g00071 Alfin 2.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00071 K26274 - egr:104437986 447.588