Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00070 ATGGATGCAGGAGCTCCGTACAATCCTCGTACGGTGGAGGAGGTTTTCAGAGATTTCAAAGGGCGCAGAGCTGGCATGATTAAGGCCTTAACCACCGGTGTTGAAGAGTTCTTTCAGCAGTGTGATCCAGAGAAGGAAAATCTTTGCCTTTATGGTTTTCCTAGCGAGCACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATGCATGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCCGATAGGAAGCGACTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCCAAGTATTCAAAAGCAATTCAACCGAAGGATGTGGATGAAGATGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGAAATACTCAGTGTGGGGCATGCGGAGAGTACTATGCGGCTAATGAATTTTGGATTTGCTGTGATATATGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCTAGGGCTGAACATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGTTAG 741 0.4494 MDAGAPYNPRTVEEVFRDFKGRRAGMIKALTTGVEEFFQQCDPEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKYSKAIQPKDVDEDGLEEEDEEEHGNTQCGACGEYYAANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARPC 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00070 246 ProSiteProfiles Zinc finger PHD-type profile. 189 241 IPR019787 -
Gabi3450g00070 246 ProSitePatterns Zinc finger PHD-type signature. 192 238 IPR019786 -
Gabi3450g00070 246 CDD PHD_AL_plant 191 241 IPR044104 -
Gabi3450g00070 246 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi3450g00070 246 MobiDBLite consensus disorder prediction 145 190 - -
Gabi3450g00070 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 240 IPR013083 -
Gabi3450g00070 246 SMART PHD_3 191 239 IPR001965 -
Gabi3450g00070 246 PANTHER CPG BINDING PROTEIN 8 244 IPR045104 GO:0006355|GO:0042393
Gabi3450g00070 246 MobiDBLite consensus disorder prediction 150 168 - -
Gabi3450g00070 246 Pfam PHD-finger 192 241 IPR019787 -
Gabi3450g00070 246 FunFam PHD finger alfin-like protein 184 240 - -
Gabi3450g00070 246 SUPERFAMILY FYVE/PHD zinc finger 181 242 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00070 Gabi-Chr3450 543932 548994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00070 1 244 Alfin-like Transcription Factor Family AT3G42790 75.397 1.26e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi3450g00070 Alfin 2.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00070 K26274 - egr:104437986 436.417