Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00065 ATGTGTACCACGATCCTTTCTTTTCATATCGATGGTACCAAAATGACAGATAAAAATCCAAGACCAGCATCTTCACCTGACAGTGATTTCACCAACCAGTGGCCTGATCTGGAGCTCTCTGAGTACTTGAAGTTCGATGATGATCAATGGGCAGATGATGGTCCAGAGTCATTTGTTTCTGAGCATGTCCTGAACCAGGATAATCAAGCCAATGAAGCAGGTGAATTTGGAGGAAGTAGCAGCCATTTTGAGGAGTCTTCTAGCAGAGACATTAGCAGTGAACCTGAGAAGAAGGAAGTTAAAGATAAAGTGGCATTCAGAACAAAGTCAGAGGTTGAAATACTGGACGATGGGTTCAAGTGGAGGAAGTACGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGTGTTCAGTGGATGGATGCCCTGTTAAAAAAAGAGTTGAGAGAGATAGGGATGATCCAAGGTATGTAATAACAACCTACGAAGGCAACCATACTCACCCAAGTCCATGCTAA 519 0.4335 MCTTILSFHIDGTKMTDKNPRPASSPDSDFTNQWPDLELSEYLKFDDDQWADDGPESFVSEHVLNQDNQANEAGEFGGSSSHFEESSSRDISSEPEKKEVKDKVAFRTKSEVEILDDGFKWRKYGKKMVKNSPNPRCSVDGCPVKKRVERDRDDPRYVITTYEGNHTHPSPC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00065 172 MobiDBLite consensus disorder prediction 87 102 - -
Gabi3450g00065 172 Gene3D WRKY domain 99 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00065 172 MobiDBLite consensus disorder prediction 48 102 - -
Gabi3450g00065 172 SMART WRKY_cls 115 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00065 172 MobiDBLite consensus disorder prediction 61 86 - -
Gabi3450g00065 172 SUPERFAMILY WRKY DNA-binding domain 107 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00065 172 MobiDBLite consensus disorder prediction 9 33 - -
Gabi3450g00065 172 ProSiteProfiles WRKY domain profile. 110 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00065 172 Pfam WRKY DNA -binding domain 116 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00065 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 171 IPR044810 GO:0003700
Gabi3450g00065 172 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00065 Gabi-Chr3450 509408 510869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00065 16 170 WRKY Transcription Factor Family AT5G26170 50.282 1.78e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3450g00065 WRKY 8.7e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00065 - - gmx:100808823 244.202