Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00060 ATGGAGGAGATGTCGACCACTGTTGCAGTTCCATTAAGAGTAGGTAATTCAGTGTGTGATAAACCAACCATAGCTACCCACATGGATGTATCCAGACTTAAGCTGATGGCAGATGCTGGATTGTTATCTAATTCTATAACTAAGGTTTCCAATGAGACTTTTATAGGTTCTGATGAGGATCATAACGGTGGCAATCTGGAGGATGATGTTGTTATTACAACAGTCACGCCACCAAAACAGAGAAGAGAAGGAGAAATTCCTTTGTTGGATATAATATCCCAAAACATAAGCACTTCGGTTGTTGGTGATGAAGTGTTAACCCCAGAAATTGAGGAGGATGATTCCTTATCATTGGAAGGTGATCCAATTATTGATAACTCTTCTCTTTCAATAGCCAGTGAGAATAGTAGTGTCTGCGGAGATGAGTTCCTCAGTTCCGACTTTACTTCAGATTTTGGGACCACAAGTTCCATAGATATAGACAAGAGCATCTCTGCTGTCAAAATTATTGCCAGGGCTGCTGATTTGGGTGAGTCAAATGTTGAGGCAGATATTATGAGCGAACCCCTTGCTGTAGCAGTGAGCCTTGAAGAAGAGACAGGAATTAGATCTGGTCCAAAGCCTACTACTGTTTTTCTTCATCAGATACCTCTGGAAAAAGGGGTGAGTGGTATATTTGGTCGGAGTGTTTTTGAATTGGATTGTACCCCCCTTTGGGGATTTACATCAATGTGTGGAAAAAGGCCTGAGATGGAAGATGCAGTTGCAACTGTACCTCGATTTTTTAAAATTCCTATCCAAATGCTAATTGGTGATAGGGTGCTTGATGGAATGAACAAGTGTTTCAATCAGCAGACAGTTCATTTCTTTGGAGTCTACGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGTGATCGGATACATTTGGCCTTGGCTGAGGAACTAGAATTTGTCAAGGAAGGTTTAATAGTTGGAAATGCCAAGAATGATTGTCAAGATCAGTGGAAAAAAGCTTTCACCAACTGTTTTTTGAAGGTTGATGCTGAAGTTGGGGGGAAAGTGAATTGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTGCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCGTTATCTGTCGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTGATACAGTGGAATGGTCATCGTGTATTTGGCGTTCTTGCAATGTCAAGGTCTATAGGGGATAGATATTTGAAGCCATGGATTATTCCAGAACCAGAAGTTACGTTTCTTCCCCGTGCAAAAGATGATGAATGTCTGATTCTGGCCAGTGATGGTTTGTGGGATGTCATGACGAATGAAGAGGCGTGTGACTTAGCTCGGAGAAGGATACTTATCTGGCACAAGAAGAATGGCTTGACACTATCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCTCAAGCAGCTGCAGAGTACCTGTCAAACCGTGCTCTTCAAAAAGGAAGCAAAGATAACATCACTGTGATTGTGGTGGATTTGAAAGCTCAAAGAAAATTTAAGAGCAAGACGTGA 1659 0.4231 MEEMSTTVAVPLRVGNSVCDKPTIATHMDVSRLKLMADAGLLSNSITKVSNETFIGSDEDHNGGNLEDDVVITTVTPPKQRREGEIPLLDIISQNISTSVVGDEVLTPEIEEDDSLSLEGDPIIDNSSLSIASENSSVCGDEFLSSDFTSDFGTTSSIDIDKSISAVKIIARAADLGESNVEADIMSEPLAVAVSLEEETGIRSGPKPTTVFLHQIPLEKGVSGIFGRSVFELDCTPLWGFTSMCGKRPEMEDAVATVPRFFKIPIQMLIGDRVLDGMNKCFNQQTVHFFGVYDGHGGSQVANYCRDRIHLALAEELEFVKEGLIVGNAKNDCQDQWKKAFTNCFLKVDAEVGGKVNCEPVAPETVGSTAVVAIICSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILIWHKKNGLTLSSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00060 552 FunFam Protein phosphatase 2C 16 226 552 - -
Gabi3450g00060 552 SUPERFAMILY PP2C-like 233 543 IPR036457 -
Gabi3450g00060 552 ProSiteProfiles PPM-type phosphatase domain profile. 238 542 IPR001932 -
Gabi3450g00060 552 CDD PP2Cc 240 542 IPR001932 -
Gabi3450g00060 552 Pfam Protein phosphatase 2C 272 535 IPR001932 -
Gabi3450g00060 552 PANTHER PROTEIN PHOSPHATASE 186 542 IPR015655 GO:0004722|GO:0006470
Gabi3450g00060 552 SMART PP2C_4 228 540 IPR001932 -
Gabi3450g00060 552 ProSitePatterns PPM-type phosphatase domain signature. 289 297 IPR000222 GO:0043169
Gabi3450g00060 552 Gene3D - 225 552 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00060 Gabi-Chr3450 466962 470573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00060 1 552 PP2C-type Phosphatase Gene Family AT1G17550 48.850 1.42e-169 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00060 K14497 - gmx:100803321 915.605