Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00057 ATGGAGGAGATGTCGACCACTGTTGCAGTTCCATTAAGAGTAGGTAATTCAGTGTGTGATAAACCAACCATAGCTACCCACATGGATGTATCCAGACTTAAGCTGATGGCAGATGCTGGATTGTTATCTAATTCTATAACTAAGGTTTCCAATGAGACTTTTATAGGTTCTGATGAGGATCATAACGGTGGCAATCTGGAGGATGATGTTGTTATTACAACAGTCACGCCACCAAAACAGAGAAGAGAAGGAGAAATTCCTTTGTTGGATATAATATCCCAAAACATAAGCACTTCGGTTGTTGGTGATGAAGTGTTAACCCCAGAAATTGAGGAGGATGATTCCTTATCATTGGAAGGTGATCCAATTATTGATAACTCTTCTCTTTCAATAGCCAGTGAGAATAGTAGTGTCTGCGGAGATGAGTTCCTCAGTTCCGACTTTACTTCAGATTTTGGGACCACAAGTTCCATAGATATAGACAAGAGCATCTCTGCTGTCAAAATTATTGCCAGGGCTGCTGATTTGGGTGAGTCAAATGTTGAGGCAGATATTATGAGCGAACCCCTTGCTGTAGCAGTGAGCCTTGAAGAAGAGACAGGAATTAGATCTGGTCCAAAGCCTACTACTGTTTTTCTTCATCAGATACCTCTGGAAAAAGGGGTGAGTGGTATATTTGGTCGGAGTGTTTTTGAATTGGATTGTACCCCCCTTTGGGGATTTACATCAATGTGTGGAAAAAGGCCTGAGATGGAAGATGCAGTTGCAACTGTACCTCGATTTTTTAAAATTCCTATCCAAATGCTAATTGGTGATAGGGTGCTTGATGGAATGAACAAGTGTTTCAATCAGCAGACAGTTCATTTCTTTGGAGTCTACGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGTGATCGGATACATTTGGCCTTGGCTGAGGAACTAGAATTTGTCAAGGAAGGTTTAATAGTTGGAAATGCCAAGAATGATTGTCAAGATCAGTGGAAAAAAGCTTTCACCAACTGTTTTTTGAAGGTTGATGCTGAAGTTGGGGGGAAAGTGAATTGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTGCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCGTTATCTGTCGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTGATACAGTGGAATGGTCATCGTGTATTTGGCGTTCTTGCAATGTCAAGGTCTATAGGGATATATAACTATGATTGGCTAGAGTTTGTGGCTTATTTTTCGTGGTGA 1374 0.4163 MEEMSTTVAVPLRVGNSVCDKPTIATHMDVSRLKLMADAGLLSNSITKVSNETFIGSDEDHNGGNLEDDVVITTVTPPKQRREGEIPLLDIISQNISTSVVGDEVLTPEIEEDDSLSLEGDPIIDNSSLSIASENSSVCGDEFLSSDFTSDFGTTSSIDIDKSISAVKIIARAADLGESNVEADIMSEPLAVAVSLEEETGIRSGPKPTTVFLHQIPLEKGVSGIFGRSVFELDCTPLWGFTSMCGKRPEMEDAVATVPRFFKIPIQMLIGDRVLDGMNKCFNQQTVHFFGVYDGHGGSQVANYCRDRIHLALAEELEFVKEGLIVGNAKNDCQDQWKKAFTNCFLKVDAEVGGKVNCEPVAPETVGSTAVVAIICSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGIYNYDWLEFVAYFSW 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00057 457 PANTHER PROTEIN PHOSPHATASE 183 444 IPR015655 GO:0004722|GO:0006470
Gabi3450g00057 457 SMART PP2C_4 228 456 IPR001932 -
Gabi3450g00057 457 CDD PP2Cc 240 446 IPR001932 -
Gabi3450g00057 457 Pfam Protein phosphatase 2C 271 446 IPR001932 -
Gabi3450g00057 457 ProSitePatterns PPM-type phosphatase domain signature. 289 297 IPR000222 GO:0043169
Gabi3450g00057 457 FunFam Protein phosphatase 2C 50 236 451 - -
Gabi3450g00057 457 SUPERFAMILY PP2C-like 233 449 IPR036457 -
Gabi3450g00057 457 Gene3D - 225 453 IPR036457 -
Gabi3450g00057 457 ProSiteProfiles PPM-type phosphatase domain profile. 238 457 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00057 Gabi-Chr3450 466603 469794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00057 1 446 PP2C-type Phosphatase Gene Family AT1G72770 43.939 2.79e-107 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00057 K14497 - gmx:100803321 705.671