Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00056 ATGGAGGATCTCGAGGAGGAAGGGAAAGGAGCAGAGGAGGTGTTGGGTTCGAGCTTGACCATGGAGAAGGTGGCGGTAGCCAAGATGTTCATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGAGCGGAAGGAGAGGCGTTGGGTTTTAGAAAGAAAACTAGCTTCTTCCGATGTGCCAAATGAGGAACGGATCAGCCTCATCAAAGATTTAGAGAGGAAAGAGACTGAATATATGCGATTGAAAAGGCACAAGATTTGTGTTAATGATTTTGAGCTTTTGACCATCATTGGAAGGGGGGCCTTTGGGGAGGTTAGACTATGTCGGGAGAAGAAATCTGGAAATATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAAGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGACTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGACATTATGACTTTGCTGATTAGGGAAGACACCTTAAGTGAAAATGTTGCTAGATTTTACATTGCACAGAGTGTTCTGGCCATAGAGTCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGGCTCTGCAAGCCTCTTGATTGTACTACCTTGTCTACACTGCACGAAAATCAGACGATGGATGATGAAACTTTGGCAGAGCCAATGGATATTGATGATGCAGACAATCGGAGCAGCTGGAGAAGTCCACTTGAACAGCTTCAGCATTGGCAGATGAACAGGAGGAAATTGGCATTTTCAACAGTGGGGACACCAGACTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTAGGAGCAATAATGTACGAAATGCTGGTTGGTTATCCTCCATTTTATTCTGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAGATTTCCAGAAGATGCTCAGCTGACACTTGAGGCTAAGGATCTAATCTACAGGTTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCACATGAAATCAAGGTTCATCCTTGGTTCAAGGGTGTGGAGTGGGATAAATTGTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGGGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGATCCACCAGCAGCTGCAAGAACTGGGTCTGGGTCCTCACGGAAGATGCTTCCAACTCCCAAAGATATAAACTTTGTTGGTTACACATACAAGAACTTTGATGCTGTAAAAGAAGGGCTTCGTCAGTCTTTTGGTGATTACATGCAAGATTATACTTCTAAACGGGCAGCAGAGGAAACAGGTTTACAAATGCTCGCGTCATCTGGAGATCCCATGTTACCATGA 1515 0.4277 MEDLEEEGKGAEEVLGSSLTMEKVAVAKMFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERISLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDIMTLLIREDTLSENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLSTLHENQTMDDETLAEPMDIDDADNRSSWRSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDAQLTLEAKDLIYRLLCDVDHRLGTRGAHEIKVHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPAAARTGSGSSRKMLPTPKDINFVGYTYKNFDAVKEGLRQSFGDYMQDYTSKRAAEETGLQMLASSGDPMLP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00056 504 Pfam Protein kinase domain 288 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00056 504 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00056 504 FunFam Non-specific serine/threonine protein kinase 415 425 - -
Gabi3450g00056 504 ProSiteProfiles AGC-kinase C-terminal domain profile. 397 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3450g00056 504 FunFam Non-specific serine/threonine protein kinase 177 244 - -
Gabi3450g00056 504 CDD STKc_NDR_like 91 461 - -
Gabi3450g00056 504 ProSiteProfiles Protein kinase domain profile. 93 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00056 504 SMART pkinase_C_6 397 462 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3450g00056 504 FunFam Non-specific serine/threonine protein kinase 295 414 - -
Gabi3450g00056 504 CDD MobB_NDR_LATS-like 27 88 - -
Gabi3450g00056 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 440 - -
Gabi3450g00056 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gabi3450g00056 504 SMART serkin_6 93 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00056 504 Pfam Protein kinase C terminal domain 415 460 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gabi3450g00056 504 Gene3D Transferase(Phosphotransferase) domain 1 179 413 - -
Gabi3450g00056 504 FunFam Non-specific serine/threonine protein kinase 54 176 - -
Gabi3450g00056 504 SUPERFAMILY Protein kinase-like (PK-like) 76 442 IPR011009 -
Gabi3450g00056 504 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Gabi3450g00056 504 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00056 Gabi-Chr3450 453064 463394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00056 1 503 AGC Kinase Gene Family AT4G33080 79.020 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gabi3450g00056 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00056 K08790 - gmx:100805455 966.452