Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00054 ATGTCTGTCCAGCAGCCGCCGCAAGATATCACAATGGTGGCTGTTGACAAAGACAAGAACAGTCGTCATGCCTTCCGATGGGCACTTAATCATCTTTACAACCCAGTCATCATCGCAGTCCATGTCAAGCACAAAAACATTCCTAATCGTAGGTACCCTTTTATCTTTCACATATATAATATAACATATGCAGAGGGCACGAATGTTTTCCCACCTGACGAAGAGGATGTAGCCAATATTTTCAATACCTTACGTGGAATGTGTGATCGTAAATCTGTCAAGATGAAAGAAGCTGTAATCGATGATAGTGATGTTGTTAGAGGACTTTTAGAATTTGCAAACAGGAATGTCATACATAGTATTGTTATCGGTGCATCGACCGTGAACCCTTTGCAAAGTCTGAAAAAGTCTAAAGGCTATAGTGATATACCAACAGCCATCATCAAATCAGTCCCGGATTATTGCTATGTATACATAATTTCCAAATTGAAGATTGTATCAGCTCGACCAGCAATAATACGACCAATGGCAAAAACATTTATCCCACCAAACTTGCAGGCATTTCCACCCAGTGAATCAGAAAATGTAGTAAGGGCACAAGAGCTTAGAAGTGGGGGCGTCAACGAAGGACCAGAAGCAAAGGCCTTTGAGAAGAGCAATGATGCAGTTAGAACACAGGTACGCGAGAGGCAAAGGAGTGCAGGAAGTAATCTGTCCATCGAGAAAATTGATCTATCTGGTCGGCGGCATCGGTCAATGGATGACAGAGTCATTTCAGAACTTGTGTCAATGGATGTAACTAAAGAAGATCTAGATGCCCTTGGGACATCGTCAGCTTCCCAATCCTCAGGAAGAGCAAAAGAACTTGAAGCTGAGATGAAAAAATTGAGGCTTGAACTGAAGCAAACTATGAAAATGTACAGCTCAGCTTGCAAACAAGCAATATCAGCCAAAACACAGGCTGAACAGATTCGTCAATGGAAACTGGAAGGGGAACGTAAGGTTGAAGAAGTTTGGTTATCTCACGAGGCAGCTCTTGCAATGGCAGAAAAGGAGAAGGCTAGAGCCAAAGCTGCATTGGATGCAGCTGAGGAAGCCAAGAAGATGGCTGAACAGGAAGCCCAGAGAAGAAAGGATGTAGAGATGAAGGCCAGGAAAGAGACAGAAGAGAGGGATCAGGCATTTCAAAATGACAATCAATACAGAAAATACACCATAGAGGAGATTGAAGCAGCTACTCAAAAGTTCTCTCCATCAAAGAAAGTAGGTGAAGGTGGATATGGACCCGTGTACAAAGCCCAACTTGACCACACCCCAGTTGCAATCAAAATTTTAAATCCTAATGCTACTCAGGGCTGGAAGCAATTCCATCAAGAGATTGAGGTTCTAAGCTGCATTAGACATCCGAATATGGTCCTCCTCCTTGGTGCCTGTCCTGAGCACGGGTGCTTGGTGTATGAATACATGGATAATGGCAGCTTAGAAGATAGACTATTTCGGAAAGGTAACAGCCCTCCGATTTCATGGAGGAAACGGTTCCAAATAGCTGCTGAGATTGCAATTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAGCCCATTGTGCACCGTGACCTTAAACCAGCTAACATTCTTTTGAACAGGAATTACGTGACTAAAATAAGTGATGTTGGTCTGGCACGATTAGTCCCTCCTTCTGTAGCTGATACTGTCACACAATATTACATGACTTCAGCTGCTGGAACCTTTTGCTATATTGATCCTGAGTATCAACAAACAGGAATTTTAACAACAAAATCAGATATTTATTCATTGGGGATAATGCTACTGCAGATAATCACTGCCAAGCCTCCCATGGGGCTTGCACACCATGTCAGGAGGGCAATTAAAAAGGATAAGTTTCCAGAGATTCTTGACCCTGTGGTAACTGATTGGCCAGTTGAAGAGGCTCTATCATTTGCCAAATTAGCATTGAGCTGTGCAGAGCTCAGCAAGAAGGACAGGCCAAGTCTTGCAACAGTTGTATTGCCAGAGCTTAACCGCTTAAGTGACCTTGGATGTAATTTACGCAATAATCAAGTCATTAGCAGTGATGATCAGAGCAAGAGCCAAGCCACACTTCCTCCCACACCTACACTAAGTCAACTGTCAAAGACGCTCACTAGGAGCTAG 2172 0.4332 MSVQQPPQDITMVAVDKDKNSRHAFRWALNHLYNPVIIAVHVKHKNIPNRRYPFIFHIYNITYAEGTNVFPPDEEDVANIFNTLRGMCDRKSVKMKEAVIDDSDVVRGLLEFANRNVIHSIVIGASTVNPLQSLKKSKGYSDIPTAIIKSVPDYCYVYIISKLKIVSARPAIIRPMAKTFIPPNLQAFPPSESENVVRAQELRSGGVNEGPEAKAFEKSNDAVRTQVRERQRSAGSNLSIEKIDLSGRRHRSMDDRVISELVSMDVTKEDLDALGTSSASQSSGRAKELEAEMKKLRLELKQTMKMYSSACKQAISAKTQAEQIRQWKLEGERKVEEVWLSHEAALAMAEKEKARAKAALDAAEEAKKMAEQEAQRRKDVEMKARKETEERDQAFQNDNQYRKYTIEEIEAATQKFSPSKKVGEGGYGPVYKAQLDHTPVAIKILNPNATQGWKQFHQEIEVLSCIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKGNSPPISWRKRFQIAAEIAIALLFLHQTKPEPIVHRDLKPANILLNRNYVTKISDVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQQTGILTTKSDIYSLGIMLLQIITAKPPMGLAHHVRRAIKKDKFPEILDPVVTDWPVEEALSFAKLALSCAELSKKDRPSLATVVLPELNRLSDLGCNLRNNQVISSDDQSKSQATLPPTPTLSQLSKTLTRS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00054 723 SUPERFAMILY Protein kinase-like (PK-like) 398 675 IPR011009 -
Gabi3450g00054 723 MobiDBLite consensus disorder prediction 696 723 - -
Gabi3450g00054 723 Coils Coil 279 306 - -
Gabi3450g00054 723 Coils Coil 346 391 - -
Gabi3450g00054 723 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 388 488 - -
Gabi3450g00054 723 Gene3D Transferase(Phosphotransferase) domain 1 489 700 - -
Gabi3450g00054 723 CDD STK_N 13 162 - -
Gabi3450g00054 723 CDD STKc_IRAK 422 682 - -
Gabi3450g00054 723 PANTHER OS02G0152300 PROTEIN 11 688 - -
Gabi3450g00054 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 134 - -
Gabi3450g00054 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Gabi3450g00054 723 Pfam Protein kinase domain 418 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00054 723 Gene3D Phosphorylase Kinase; domain 1 384 488 - -
Gabi3450g00054 723 SMART serkin_6 416 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00054 723 ProSiteProfiles Protein kinase domain profile. 416 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3450g00054 723 Gene3D HUPs 2 157 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00054 Gabi-Chr3450 430813 434421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00054 95 686 Receptor kinase-like Gene Family AT5G12000 57.724 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi3450g00054 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00054 - - gmx:100798861 926.391