Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00053 ATGGCTGAGTTGGCACCAGAAGGATCACAATTGGATGCTCGTCAACATGATGCTGAGATGAATGAGTTACATGGAACTGATGGGCAAGAGAATTTTACTTCTTATGACGAAGTTTATGCAAGCTTTGATGCTATGGGATTGAAGGAGAAACTTCTGAGGGGCATTAATGCACCTGGTTTTGAGAAGCCCTCTGTAATTCAGCAAAGGGTGATTGATCCTTTCTGCAAGGGAATTGATGTAATTCAGCAAGCACAATCTGGAAAGGGGAAAACTGCTACCTTTTGCTCTGGAATTTTGCAGCAGCTTGATTACAGCTTGGTTGAATGTCAGGCACTGGTTCTTTCTCCCACTCGTGAACTTGCTCAACAAATTGAGAAGGACGTGCGAGTACTTGGTGACTATCCTGGTGTCAAGGTTCATAATTGTGTGGGTGGGACCAGTGTTCATGAAGATCAACGCAACCTCTCAAGCGAGGTTCATATAGTTGTCGGTACCCCTGATCGTGTAATTGACATGCTGCGTGGACAATCTTGGCGCCGTGATTATATTAGGATGTTTGTATTAGATGAGGCATATGAGATGATGCTCTCTCGAGGTTTCAAGGATCGGATCTATGATATTTTTCAGCTGCTGCCATCTAAGATACAGGTTGGGGTTTTTTATGCATACGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGTGCGATGGTTCCTTTCTGCAAGGGAATTGATGTAATTCAGCAAGCACAATCTGAATCTGGAAAAACTGCTACGATTTGCTCTGGAATTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGTCAGGCACTGGTTCTTGCTCCCACCCGTGAACTTGCACAACAACTTGAGAAGGACATGCGAGCACTTGGTGACTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCATGAAGATAAACGCATCCTCTCAGGCGGGGTCCATGTAGTTGTTGGTACCCCTGGTCGTGTAATAGACATGCTGCGTAGAAAATCTTGGTGCCGTGATTATATTAGGATGCTTGTACTAGATGAGGCATATGAGCTGATGCTCTCTCGAGGTTTCAAGGATCAGATCAATGATATTTTTCAGCTGCTGCCATCTAAGATGCATGTTGGGGGTTTTTATTCGTACGGTTGTGAGAAGCCCTCTGCAATTCAGAAAAGGGGGATTATTCCTTTCTGCAAGGGAATTGATGTAATTCAACAAGCACTATCTGGAACTGAAAAAACTGCTATGTTTTGCTCCGGAATTTTGCGGCAGCTTGATTACAGCTTAGTTGAATGTCAGGCACTGGTTCTTGCTCCCACTCGTAAACTTGCACGACAAATTGAGAAGGTCATGCAAGCACTTGGTGACTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGCGGGACCAGTGTTCGTGAACAACAACACATCCTCTCGAATGGGGTCCATGTAGTTGTTGGTACCCCTCGTCGTGTATTTGACATGCTGCGTGGACAATCTTTGCGCCCGAATTATATTACAATGTTTGTATTGGATGAGGCATGTGAGACGATGCTCTCTCGAGGTTTGAAGGATCAGATCTGTGATATTTTTCAGCTGCTGCCATCAAACATTCAGCTTGGGGTTTTAAAGCTGCCTGTTGTAGAAAGCTATTAG 1677 0.4454 MAELAPEGSQLDARQHDAEMNELHGTDGQENFTSYDEVYASFDAMGLKEKLLRGINAPGFEKPSVIQQRVIDPFCKGIDVIQQAQSGKGKTATFCSGILQQLDYSLVECQALVLSPTRELAQQIEKDVRVLGDYPGVKVHNCVGGTSVHEDQRNLSSEVHIVVGTPDRVIDMLRGQSWRRDYIRMFVLDEAYEMMLSRGFKDRIYDIFQLLPSKIQVGVFYAYGFEKPSAIQQSAMVPFCKGIDVIQQAQSESGKTATICSGILQQLDYSLVECQALVLAPTRELAQQLEKDMRALGDYLGVKVHACVGGTSVHEDKRILSGGVHVVVGTPGRVIDMLRRKSWCRDYIRMLVLDEAYELMLSRGFKDQINDIFQLLPSKMHVGGFYSYGCEKPSAIQKRGIIPFCKGIDVIQQALSGTEKTAMFCSGILRQLDYSLVECQALVLAPTRKLARQIEKVMQALGDYLGVKVHACVGGTSVREQQHILSNGVHVVVGTPRRVFDMLRGQSLRPNYITMFVLDEACETMLSRGLKDQICDIFQLLPSNIQLGVLKLPVVESY 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00053 558 Pfam DEAD/DEAH box helicase 230 379 IPR011545 GO:0003676|GO:0005524
Gabi3450g00053 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 213 IPR014001 -
Gabi3450g00053 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 401 521 IPR014001 -
Gabi3450g00053 558 Pfam DEAD/DEAH box helicase 66 214 IPR011545 GO:0003676|GO:0005524
Gabi3450g00053 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 220 IPR027417 -
Gabi3450g00053 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 383 IPR027417 -
Gabi3450g00053 558 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Gabi3450g00053 558 Pfam DEAD/DEAH box helicase 395 544 IPR011545 GO:0003676|GO:0005524
Gabi3450g00053 558 Gene3D - 24 219 IPR027417 -
Gabi3450g00053 558 SMART ultradead3 59 220 IPR014001 -
Gabi3450g00053 558 SMART ultradead3 389 555 IPR014001 -
Gabi3450g00053 558 SMART ultradead3 224 388 IPR014001 -
Gabi3450g00053 558 Gene3D - 220 382 IPR027417 -
Gabi3450g00053 558 Gene3D - 383 551 IPR027417 -
Gabi3450g00053 558 PANTHER RNA HELICASE 28 222 - -
Gabi3450g00053 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 547 IPR027417 -
Gabi3450g00053 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 378 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00053 Gabi-Chr3450 406277 412027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00053 384 550 Eukaryotic Initiation Factors Gene Family AT3G13920 78.443 1.24e-83 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00053 K03257 - pda:103713109 348.206