Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00041 ATGCAAGGAAATAGAGTGAAAGAGGAAGAAACAGTGGTATGCGGAGGTGGTTCATCTTCGTCTTCTTCCGCAAGTTCAAACCTTTCCCCACAGCCCATGAAAGGGTTGCACGAGGCAGGTCCACCTCCATTTCTCACCAAAACCTTTGACGTTGTCGAAGATCCATCCACTGACTCCATTGTTTCGTGGAGCACTGCTCGCAATAGTTTCGTTGTTTGGGATTCTCACAAGTTCTCCACCACCATTTTGCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGACAGCTCAACACCTATGGTTTTAGAAAAGTTGATCCAGATAGATGGGAATTCGCAAACGAAGGGTTTCTGGCAGGGCAGAGGGAGTTGTTGAAGACCATAAAGAGAAGAAGAAATGTGACACAGTCACAGGGAATGCAATTGCAAGGAGAAGGAGGAAGTGGGGGCACTTGTGTTGTTGAATTGGGTGAGTATGGGTTGGAAGGTGAACTTGAGAGGTTGAGGAGAGACAGGACGGTGTTAATGGAAGAAATTGTGAAGTTGAGGCAGCAACAACACAACTCAAGGGAGCTATTATCTGACATGGGGACTAGATTGCAAACCACAGAGAAGAAACATCAACAGATGATGACTTTCCTTGCCAAAGCACTCAATAATCAATCTTTCATTCAACAATTCCTCCAGAGGAATGCTCAGAACAAAGAATTATTGCAGGGTGTTGAAACCAGGCGTAAGCGGAGACTAACTGCAAGCCCAAGCGTTGCGAATTTGCAACAAGTTCCTGTTACTGTGGCAGTCCCAATTAAGGAACCAATTGTGGACTTTCCAAGTCAAGAAGAACCGGAGGAAGACTTTGCAACTCTTGAGTCTGATATGGAGACATTCTTCTTATCTGCTTATGATAATGATTCAAGCAGTGAAATTAAAGACACAACATCAAGTTCAGTTCCAACTGCCAGTGGTAGTAATTTGAGTTCAGCCAGTGATGCTATATGGGAGGACTTGCTGAACCAAGACTTGGTTGCTGGGAATCCTGAGGATGAAGTTGTAATTGGTGATTTTTCCCAAATTGATGTGCCAGTGGAGGATTTGGTAGCTAAGCACGATGATTGGACCGAGGACTTGCGGAATCTTGTGGACCATATGGGTTATCTTGGGTCCAAACACTAG 1179 0.447 MQGNRVKEEETVVCGGGSSSSSSASSNLSPQPMKGLHEAGPPPFLTKTFDVVEDPSTDSIVSWSTARNSFVVWDSHKFSTTILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRELLKTIKRRRNVTQSQGMQLQGEGGSGGTCVVELGEYGLEGELERLRRDRTVLMEEIVKLRQQQHNSRELLSDMGTRLQTTEKKHQQMMTFLAKALNNQSFIQQFLQRNAQNKELLQGVETRRKRRLTASPSVANLQQVPVTVAVPIKEPIVDFPSQEEPEEDFATLESDMETFFLSAYDNDSSSEIKDTTSSSVPTASGSNLSSASDAIWEDLLNQDLVAGNPEDEVVIGDFSQIDVPVEDLVAKHDDWTEDLRNLVDHMGYLGSKH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00041 392 MobiDBLite consensus disorder prediction 307 326 - -
Gabi3450g00041 392 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00041 392 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00041 392 MobiDBLite consensus disorder prediction 14 32 - -
Gabi3450g00041 392 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00041 392 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00041 392 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00041 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 277 IPR027725 -
Gabi3450g00041 392 Gene3D - 36 134 IPR036388 -
Gabi3450g00041 392 FunFam Heat shock transcription factor 1 37 134 - -
Gabi3450g00041 392 Coils Coil 167 187 - -
Gabi3450g00041 392 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3450g00041 392 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Gabi3450g00041 392 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00041 Gabi-Chr3450 340284 343589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00041 30 391 HSF AT2G26150 50.964 9.73e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3450g00041 HSF_DNA-bind 6.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00041 K09419 - gmx:100794605 513.842