Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00022 ATGGTTTATCCAAACAGTGCACATGGCCATAATTTATCCCTCTACAAAGTAGAGGAAGAAGAAAACAAAAGCGTTTCCGAGTCTACAAAATGGATGTCTTCAAAGATAAGGTTGACGAGAAAAATGATTACCCCGACTAACAGTACTGTAGCCACTAATAACATAGCATTCAATACTACTACTACTACTCCAACATTCCAAAATCATCAAGGGCACGGAAACACCCAAACAAATGCTTCTACTCACAACGGTAACAGCATCATTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTATGGAGGAGTGGTCCTAAGGGTCCCAAGTCGCTTTGCAATGCCTGTGGCATTAGACAGAGAAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAACGGTTTTGCCACTAATTCCATGGTTGCATCATCTACAAAAACCAGAGTAGTGCATCACAAGGAAAAGAAATCTCGTACGAAACATTTTGCACAGTACAAGAGTAAGAGCAAGGCAACTTCAACTACTATAGCAGGAACATCTGAGGGAGAAAAGAAGCTTGATTTCAAAGATTTTGCTGTAAGTTTGAGGAATAACTCGGCTTTTCAGCAAGTGTTTCCAAGGGATGAAGTAGCTGAGGCGGCCCTGCTTTTAATGGAATTATCTTGTGGCTTTGTTTATTTTTAA 681 0.4126 MVYPNSAHGHNLSLYKVEEEENKSVSESTKWMSSKIRLTRKMITPTNSTVATNNIAFNTTTTTPTFQNHQGHGNTQTNASTHNGNSIIRVCSDCNTSSTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGFATNSMVASSTKTRVVHHKEKKSRTKHFAQYKSKSKATSTTIAGTSEGEKKLDFKDFAVSLRNNSAFQQVFPRDEVAEAALLLMELSCGFVYF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00022 226 ProSiteProfiles GATA-type zinc finger domain profile. 89 121 IPR000679 GO:0006355|GO:0043565
Gabi3450g00022 226 SMART GATA_3 85 136 IPR000679 GO:0006355|GO:0043565
Gabi3450g00022 226 Pfam GATA zinc finger 91 124 IPR000679 GO:0006355|GO:0043565
Gabi3450g00022 226 ProSitePatterns GATA-type zinc finger domain. 91 116 IPR000679 GO:0006355|GO:0043565
Gabi3450g00022 226 Gene3D - 88 173 IPR013088 GO:0006355|GO:0008270
Gabi3450g00022 226 CDD ZnF_GATA 90 127 IPR000679 GO:0006355|GO:0043565
Gabi3450g00022 226 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 8 224 - -
Gabi3450g00022 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 86 126 - -
Gabi3450g00022 226 FunFam GATA transcription factor 21 85 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00022 Gabi-Chr3450 229210 230072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00022 28 225 C2C2-Gata Transcription Factor Family AT4G26150 36.486 4.95e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3450g00022 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00022 - - gmx:100780326 219.55