Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00019 ATGGAGAACACTGAGTTTCAAGAGCATTTAGCTGGAGGAATGCCAATTACTCCTGCTTCACTTGCTGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTAGATAATTCAGCAGCTTTGCCTCCTCCACTCTGTACTTCAATGGGGGCAGTGGGGCCACATATCTTCAATAATTGGCTAGGTACTTCAAACCCTTTGTCTACAACTCTTGAGGACCATGGTTACAATGAAGTACCTGGTAATAGTAAATGGAATGTTAACAAGTTTCCTAAAGCCACAGAGATTGATGGAGTAGGGTGCCAGCCTTATTCATCCATTGGAAACCTGGATCCAGATGGATGGACATCATCAAATGTTGCAAACATGACCAATCATTCTTATCATTCCTCTAACTTTAGTAATGAACTCTCTTTAAGTCTTGTAACATCTACAACCACAGGACAATGCTCAGATGTCAGTTGCTCTGATGTGGCCCAATGCATGAATGGAACTATGTCATGCTTGGAGCAAGCCTCCTGCAGCAGTAGTAGGGAACTTTCTATGAGTTTGGGTTGTAATAAATTTGTACAGTTCTCACCAGAAGTATTCGGGTCGAAATATCTTGCTGGAATTCAAGAGATACTTTCTCAAATTGCAAGATATTCATTTGAGAATCTAGAACAGATAAATTGTTCAGCTGCTGGTAATAGAGCAGATGGAAACAAATCAACTTCAGCTCTTCCACCCAAGAGAAGGGTATTGATAAATCACAATGCAAATTCTATGTTTGAAGCACATGCAGAATCTCCATTGCAAAGGCATGCAGCGGAATCAAAGAAGTCCGAACTACTGACACTTCTACAACTGGTTGATAATCAATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCATGCTGTTACAGAGCTGGACCCACAAATACATGCACATTTTTCTCTTCAAAAGATCTCTATCCTGTACAAGGACTTGAGAGAGAGGATTAGCAATCATATTATTGCCATGGGATCAAATTTCAACAACTCGTGCTCACAAGAAAAGGAATGGTCTGTTGTTGAAACTTCATTTCTTCAAAAGCAATGGGCTTTCCAGCAGTTGAAAAGAAAAGATCATCAGTTATGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTCTAAGGGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAGGAAATGTATACTGAAATGAATAAAAGAAGGGCTTGTCGAAATGGAGAAGGAATGGAGAGCTGCCACGACAACAGGATAAACATGAGCAATTAA 1416 0.4068 MENTEFQEHLAGGMPITPASLAAILAARIGLEENLDNSAALPPPLCTSMGAVGPHIFNNWLGTSNPLSTTLEDHGYNEVPGNSKWNVNKFPKATEIDGVGCQPYSSIGNLDPDGWTSSNVANMTNHSYHSSNFSNELSLSLVTSTTTGQCSDVSCSDVAQCMNGTMSCLEQASCSSSRELSMSLGCNKFVQFSPEVFGSKYLAGIQEILSQIARYSFENLEQINCSAAGNRADGNKSTSALPPKRRVLINHNANSMFEAHAESPLQRHAAESKKSELLTLLQLVDNQYSQCLDEIHTVVSAFHAVTELDPQIHAHFSLQKISILYKDLRERISNHIIAMGSNFNNSCSQEKEWSVVETSFLQKQWAFQQLKRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYTEMNKRRACRNGEGMESCHDNRINMSN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00019 471 CDD homeodomain 378 439 IPR001356 GO:0003677
Gabi3450g00019 471 Pfam Associated with HOX 197 333 IPR006563 -
Gabi3450g00019 471 SMART HOX_1 378 442 IPR001356 GO:0003677
Gabi3450g00019 471 SUPERFAMILY Homeodomain-like 380 447 IPR009057 -
Gabi3450g00019 471 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 141 451 - -
Gabi3450g00019 471 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Gabi3450g00019 471 SMART prehox3 190 334 IPR006563 -
Gabi3450g00019 471 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Gabi3450g00019 471 Gene3D - 381 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00019 Gabi-Chr3450 162208 164189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00019 135 451 Homeobox Transcription Factor Family AT4G32980 56.113 1.77e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3450g00019 POX 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00019 - - gmx:100820354 731.865