Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00003 ATGATCCCAAACCTTCAAATTCCTCATTGGGACACAACACAATCCGATGGAGGAGCACCGTCCCCATTCTCCATTAATGCAGTGGATGAAGATTTCGACATGCCCATCCACCTATTCTCCAGCGATCATTTCCGAATGTTCCAGTTCAAGGTCAGAGACTGTCCACGTGGCAGGTCACATGACTGGACGGAGTGTCCCTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGCAAATACCATTACTCCGGCACCGCATGCCCCGAGTTTCGAAGAGGGAACTGCATGAAAGGTGACTCGTGCCAGTTCGCTCACGGCGTCTTCGAATGCTGGCTCCACCCTTCTCGTTACAGAACCCAACTCTGCAAAGACGGAACCAGTTGCCGCCGCCGAGTGTGCTTCTTTGCTCACACCATGGACCAACTTCGTGTCTTGACTCATGGCTCGCCTGAATCGTTTGTTACATCTCCTACTTCGGTCCTTAACTCTTCGCTCTGTGATACGCCACCAGTTTCGCCCGGAAACCTCCGTGAAATAGTGAGTTCAATGCGTAATGTTAAACTTGAGGTTGAGGATGTGTCTTCCGGTTCAACCCGGGGATCCAAGATGGGTCGTTGTTGTGTGTTTGGGTCTACCCGAGGTGGGTTTATGAGTATGCCATCAACTCTCAATCGATGTGAAGAAGAGCCTGCTATGGAGAGGGTGGAATCTGGAAGAGACCTTAGAGCGAAAATCTACGCCAAACTTAGTAGGGAGAACTCGATTGGGAGAAATAACGCTGCATTTTCATATCCTATCCCTGATGTTGGATGGGTCTCGGAACTGATTAGGTGA 840 0.5107 MIPNLQIPHWDTTQSDGGAPSPFSINAVDEDFDMPIHLFSSDHFRMFQFKVRDCPRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRRGNCMKGDSCQFAHGVFECWLHPSRYRTQLCKDGTSCRRRVCFFAHTMDQLRVLTHGSPESFVTSPTSVLNSSLCDTPPVSPGNLREIVSSMRNVKLEVEDVSSGSTRGSKMGRCCVFGSTRGGFMSMPSTLNRCEEEPAMERVESGRDLRAKIYAKLSRENSIGRNNAAFSYPIPDVGWVSELIR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00003 279 ProSiteProfiles Zinc finger C3H1-type profile. 84 110 IPR000571 GO:0046872
Gabi3450g00003 279 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3450g00003 279 PANTHER UNKEMPT FAMILY MEMBER 37 278 IPR045234 -
Gabi3450g00003 279 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Gabi3450g00003 279 SMART c3hfinal6 118 141 IPR000571 GO:0046872
Gabi3450g00003 279 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 108 IPR000571 GO:0046872
Gabi3450g00003 279 FunFam Zinc finger CCCH domain-containing protein 66 41 109 - -
Gabi3450g00003 279 Gene3D - 83 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00003 Gabi-Chr3450 40894 41992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00003 33 147 C2H2 Transcription Factor Family AT5G12850 64.348 2.29e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3450g00003 zf-CCCH 8.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00003 - K23048 gmx:100786368 367.081