Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3450g00001 ATGGAGGAATACACTAATAATAATAATAATAATAATAATAATAATCACCCGAGTCAAAGTCCAAGGGAAAATTTCTTGTATTCTTCTTTGGCTGGTTCAAGCGTTGGAAACCGCCATCATCAACTTCCCATCAACACCTTTCATCTTCAATCGGGTGGATCGGTTCACTCCGATCAAATACCACATCCTACTGTGAAAACCGAGTCCAACAACTCGCAGCTTCACTCTCCGATTTTCCACTATCCTTTATTGAGAGGAAATCTTCACCACACGCTGCATCCTCATCATCCAAGTCAGCAAGGAGGGACTCGGAGCTCTAACGAAGTTGAATCCATAAAAGCGAAAATCATTGCTCATCCTCAATACTCCAATCTTTTACAAGTTTACATGGATTGCCATAAGGTAGGAGCTCCGGCAGAAGTGGTGGCGCGTTTGGCTGCGGCTCGACAGGATTTTGAGGCACGGCAGCGATCTTCGGTTAGTTCAAGGGAAACTTCTAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGAGAGGAATTAACAAGGCCTATACAAGAGGCCATGGATTTCATGCGGAGGATAGAAACTCAGCTGAACATGCTTTGCAATGAACCAGTGCGGATCTTCTCTGATGATAAATGTGAAGGCGTTGGTTCATCGGAAGACGATCAAGACAACAGTGGTGGAGAAACAGAACTTGCTGAAATCGATCCGAGGACAGAAGATCGTGAACTCAAAAACCACTTGCTCAAGAAGTATAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAAAAAGGAAAACTGCCTAAAGATGCAAGGCAAAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCGTTGGCTGAATCAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATTAACCAAAGGAAGCGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTCATGGATGGCTTGCATCCGCAGAATGCAACTGTCTATATGGATGGCCAATACATGCCTGATGGGCATTACCGCATAGGGCCATAA 1116 0.4355 MEEYTNNNNNNNNNNHPSQSPRENFLYSSLAGSSVGNRHHQLPINTFHLQSGGSVHSDQIPHPTVKTESNNSQLHSPIFHYPLLRGNLHHTLHPHHPSQQGGTRSSNEVESIKAKIIAHPQYSNLLQVYMDCHKVGAPAEVVARLAAARQDFEARQRSSVSSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNEPVRIFSDDKCEGVGSSEDDQDNSGGETELAEIDPRTEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATVYMDGQYMPDGHYRIGP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3450g00001 371 MobiDBLite consensus disorder prediction 93 109 - -
Gabi3450g00001 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Gabi3450g00001 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Gabi3450g00001 371 MobiDBLite consensus disorder prediction 222 248 - -
Gabi3450g00001 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Gabi3450g00001 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Gabi3450g00001 371 MobiDBLite consensus disorder prediction 50 72 - -
Gabi3450g00001 371 SUPERFAMILY Homeodomain-like 274 348 IPR009057 -
Gabi3450g00001 371 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Gabi3450g00001 371 Pfam KNOX1 domain 112 152 IPR005540 GO:0003677|GO:0005634
Gabi3450g00001 371 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
Gabi3450g00001 371 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Gabi3450g00001 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Gabi3450g00001 371 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3450g00001 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Gabi3450g00001 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Gabi3450g00001 371 Gene3D - 278 340 - -
Gabi3450g00001 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Gabi3450g00001 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 343 - -
Gabi3450g00001 371 MobiDBLite consensus disorder prediction 88 109 - -
Gabi3450g00001 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3450g00001 Gabi-Chr3450 10328 14439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3450g00001 63 371 Homeobox Transcription Factor Family AT4G08150 70.382 1.74e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi3450g00001 KNOX2 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3450g00001 - - gmx:100807602 595.89