Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3447g00002 ATGAAGTTAATTGGCGACGGAGGCGGTGGCCGGACGGTGTTGGTCGGCGTAAAATTAGATCCTCGGAGCCGGGAATTGCTGACGTGGGCTCTCGTCAAGGTGGCTGAGCCTGGCGACCTTGTCATTGCGCTTCACGTTCTCGACACCATCACTGAAGGTACATCATCGCTGCTATCTCTGGTGAAGACATTTGATTCTGTTCTCGCGGTATACGAAGGCTTCTGCAATTTAAAGCAGGTTGATCTCAGGCTTAAAGTATGTAGAGGTGCTTCGGTTCGGAAGCTTCTGGTACAAGAAGCGAAATCGTTTGGCGTTGCGACGGTGATTCTAGGAACTTCTAAATCTCATCACCCAATCCGTTCGTCGACATCGGTTGCCAAGTATTGCGCCAAGAAATTGCCTAAGTGTATCTCTGTCTTCGCTGTTGATAATGGCAAAACTGCATTCCATAGAGAAGCTACCACAATATGTAATAATAATATTGATCAAGAAAAATTACTACATGAAGGATCAAGTTTATCACCAAAATCGTTGGTGGCTTATATAAATAAAAATATGAAGAATTGTGAAAGATGTGCACTGCAAGAGACTTCTGATACTGAATTTAAGCAAGGGTTCCCTGATGATCTTGAAAAGGAAAATCCCCTTGCTATGGTACCATTTCAAAAACATGATGATGATCCTGGTTATTCAGTTGTGGTGTGTGATTCAAAACAGTCAAAACCTGGTTGGTCACTCCTTCGCCAGGTATTTCACCCCAGAAAGCATACTCCCAAGGCTTTCCTGAAAAATACATTTGTTTTTCATCGGCCATTACGACAGCCCGACCGGCATTTTTCAGCTGTAGTCCATCCAGATCATAAACAAATTACTGTTGAGCAGAATGATGATTCCACCCTGAATGGGGAGAGTGGTGCCATTGTGCCATTTGGATCTGATACCATCTTTCCTCCTCTAGCCCTTTGCTGTGACTTGAGTAACCTTCCTGAAGAATTGTTGGTCTTACAAGAGAAGTACTCATCTTCATGTAGATTATATAGTTTGCAGGAACTTGTATCTGCAACCGCTAACTTCTCACCCGAAAATTTGGTTGGCAAAGGTGGTAGTAGTTATGTTTATAGAGGATGTCTTCCAGATGGAAAGGAATTGGCTGTGAAAATTTTGAAGCCATCTGAAGATGTGCTAAAAGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCATCACAAGAACATAATATCTCTTTCTGGCTTTTGTTTAGAGGGCAACCATTTACTACTGGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAATCTTCATGGCAATAAGAAGGACTGTAATGCATTTGGTTGGCAAGAGAGGTACCGGGTGGCTGTGGGTGTAGCTGAGGCATTGGACTATCTGCATAATGGCTGTGCACAGGCTGTGATCCATAGAGATGTGAAATCTTCGAATATTCTTCTTTTGGATGATTTTGAGCCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGAGTTCTTCTTCTTCCCATATTACTTGTAGTGATGTGGCCGGAACTTTTGGGTACCTAGCTCCTGAATACTTTATGCATGGTAGAGTGACTGACAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAGTGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACAACAATTTTGAAAGGTGGGAAGTTTTTCCAGTTGCTTGATCCAAGCCTGGGCAGTGAATACGACCATTGCCAGATGAAGAGAATGGTTTTGGCAGCTACTCTCTGCATTAGACGGGCACCAAGATTGCGTCCCCAAATCAGCCTTATATTGAAACTTCTGCATGGTGATGAAGAAGTGACAGGATGGGCAGAACAAGAAGTTAGTGCTCCACACGAACTTGATGGATTTGATGAGGAACCAGCTCCAACTAATATTCAGTCCCACCTGAACCTTGCTTTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCACTGAGCAGAATGTCTCATTGGAGGATTATTTGCAGGGCAGATGGAGTCGCTCTTCAAGTTTTGACTAA 2109 0.4315 MKLIGDGGGGRTVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGASVRKLLVQEAKSFGVATVILGTSKSHHPIRSSTSVAKYCAKKLPKCISVFAVDNGKTAFHREATTICNNNIDQEKLLHEGSSLSPKSLVAYINKNMKNCERCALQETSDTEFKQGFPDDLEKENPLAMVPFQKHDDDPGYSVVVCDSKQSKPGWSLLRQVFHPRKHTPKAFLKNTFVFHRPLRQPDRHFSAVVHPDHKQITVEQNDDSTLNGESGAIVPFGSDTIFPPLALCCDLSNLPEELLVLQEKYSSSCRLYSLQELVSATANFSPENLVGKGGSSYVYRGCLPDGKELAVKILKPSEDVLKEFVQEIEIITTLHHKNIISLSGFCLEGNHLLLVYDFLSRGSLEENLHGNKKDCNAFGWQERYRVAVGVAEALDYLHNGCAQAVIHRDVKSSNILLLDDFEPQLSDFGLASWSSSSSHITCSDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNECPKGQESLVMWATTILKGGKFFQLLDPSLGSEYDHCQMKRMVLAATLCIRRAPRLRPQISLILKLLHGDEEVTGWAEQEVSAPHELDGFDEEPAPTNIQSHLNLALLDLEDDAVSISSTEQNVSLEDYLQGRWSRSSSFD 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3447g00002 702 ProSiteProfiles Protein kinase domain profile. 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3447g00002 702 SUPERFAMILY Protein kinase-like (PK-like) 338 628 IPR011009 -
Gabi3447g00002 702 Gene3D Phosphorylase Kinase; domain 1 327 432 - -
Gabi3447g00002 702 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
Gabi3447g00002 702 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Gabi3447g00002 702 CDD USP_Like 12 137 - -
Gabi3447g00002 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Gabi3447g00002 702 Gene3D Transferase(Phosphotransferase) domain 1 433 644 - -
Gabi3447g00002 702 FunFam Putative receptor-like serine/threonine-protein kinase 433 644 - -
Gabi3447g00002 702 Pfam Protein kinase domain 361 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3447g00002 702 SMART serkin_6 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3447g00002 702 Pfam Universal stress protein family 11 135 IPR006016 -
Gabi3447g00002 702 Gene3D HUPs 10 143 IPR014729 -
Gabi3447g00002 702 PANTHER OS08G0249100 PROTEIN 68 640 IPR046958 -
Gabi3447g00002 702 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 327 432 - -
Gabi3447g00002 702 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3447g00002 Gabi-Chr3447 31564 35151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3447g00002 341 624 Trihelix Transcription Factor Family AT1G68690 44.828 1.37e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3447g00002 Pkinase 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3447g00002 - - gmx:100815722 1118.61