Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3446g00003 ATGGGTCGTTCAAAGACAACCTTCAAACGTATTCCAAATGATAGAGTTCGTAAAGCAACTTTCATGCAGAGAAGAAAGGGACTAATGAAGAAAATATCTGAATTTTCAACTATGTGTGGAGTTGAAGCTTGCTTAATTGTGTATGATGAGAATGGGGATGCTCGACCTATGACTTTTCCCCAACAACCTACAAAGGTACAGTCCATCATTAACAAGTATGAGCGGGAAAAAAATGAGAAACCTTGCAAGATCTTTGATCTTGAAGACTTTTTCAAGAATAAGATGAACATGGTTGAAGCTGAGATTTCAAAAGTGCAGAAAGAGACCCTCAAGATCCAAAATCCAACTTCGCATCCGAGTTTCAATATTCTAGAAGAGGAGCAGTTGAACGAGTTCATTGCTGTGTTGGATGCTAAGCTTGGAGCTTGTAACGAGAGAATTGAGATATTAAAAAAAGAGCATCGAACTGAAGCCAATAATCTCAATTGCATCCAAAGCATGGCTCCGGAGACCTCAGGAGCAAGCCAACTCAATTTCATGCACAACGTGTCTGGAAGCCAACTTATCCCTGCTCCTATGAATGCACTCAACGATTACAATGGGAACATGGTTTCTATGTTGGGTGCTAAGAATGAAGCCTGTAATCAGAGAATTGGTATGCTGCAAAACCAAACTCAAAGCCAATTTATCCCTACTCCTATGAATGCACTCATTGATAATAATGGGAACATCATTTATATGTTGGATGATGGAGCTGGTAGTCAGACAATTGAGATGTCACAAAACGATAATCAAAGTGAAGCCAACTTCAGTTTCATACAAAATATGATTCAAGAGAGTATTGTCTCTGATCAAAGCCAACTCAATTTCATGCCATATAATTTTCAAAACCAACTTATCCCTTTTCCAATGAACGAACTCAATAATTATAATGGGACGATGAATTTTACTAATCAAGTTCAAGTGCCTCTACATTCTACAAATCAACTTTGTAGGCATATGGACTGTGCTGGACAACTTGATGAGCTTCACCATTTGACAGGGTCTCAGAATTCGGCTAATGAAATAAGTGAACTTTTGAATTGGACCGGGGAACCTGATGAATCTGTGTTGCTGAATAATCCCTTGCCACCACCGATGTATGAATTTCAAAACAATGCGTGGTTATCCTACCACATGAATCCGTAA 1188 0.3889 MGRSKTTFKRIPNDRVRKATFMQRRKGLMKKISEFSTMCGVEACLIVYDENGDARPMTFPQQPTKVQSIINKYEREKNEKPCKIFDLEDFFKNKMNMVEAEISKVQKETLKIQNPTSHPSFNILEEEQLNEFIAVLDAKLGACNERIEILKKEHRTEANNLNCIQSMAPETSGASQLNFMHNVSGSQLIPAPMNALNDYNGNMVSMLGAKNEACNQRIGMLQNQTQSQFIPTPMNALIDNNGNIIYMLDDGAGSQTIEMSQNDNQSEANFSFIQNMIQESIVSDQSQLNFMPYNFQNQLIPFPMNELNNYNGTMNFTNQVQVPLHSTNQLCRHMDCAGQLDELHHLTGSQNSANEISELLNWTGEPDESVLLNNPLPPPMYEFQNNAWLSYHMNP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3446g00003 395 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3446g00003 395 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi3446g00003 395 Coils Coil 133 153 - -
Gabi3446g00003 395 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3446g00003 395 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gabi3446g00003 395 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Gabi3446g00003 395 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Gabi3446g00003 395 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3446g00003 395 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3446g00003 395 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3446g00003 395 PANTHER MADS BOX PROTEIN 3 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3446g00003 Gabi-Chr3446 105188 106375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3446g00003 1 138 Type I MADS-box Gene Family AT5G55690 32.867 4.30e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi3446g00003 SRF-TF 6.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3446g00003 - - ccaj:109809010 225.713