Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3445g00004 ATGATGGGAAACACTTGTGCAAAACCGGTTGCTCATGTGTCTTCTTCTAATTTTGCAGGAAGCAAGAAGCCTCTAAGCAAGACAAAGCAGCATTCAAATTCTTCTGAACAAAAAGCTGTTGTCCAAACTTCAAAGTTAAATATTGCCAAATCAATCTCCAATAACCTTAAGTCCTTCAGCTTGAGTGATCTAAAGGAAGCAACTAAGAACTTCCGGCAAGACAATTTGATTGGAGAGGGAGGGTTTGGACGCGTCTTCAAGGGATGGATTGATGAGAACACATATGCTCCCACAAAACCAGGGAGTGGAATTGTAGTGGCCATTAAGAATCTTAAGCAAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAGTTATCTAGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGTTTGGAGGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAAAAAGGAAGTTTGGAGAATCATTTATTTAGAAAAGGTGTTCAACCCATTGCCTGGATTACACGGGTCAACATTGCAATTGGTGTTGCAAGAGGATTAACATTCTTACATTCCCTGGATGCAAATGTTATCTTTCGCGATTTAAAGGCTTCCAATATTCTACTTGATTCAGATTTCAATGCTAAGCTTTCTGATTTTGGCTTGGCAAGAGATGGTCCTACCGGAGATAATACTCACGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTGGCTACAGGTCATTTGACTCCAAGGAGTGATGTATACAGCTTTGGTGTTGTATTGTTAGAGTTGCTAACAGGAAGGCGTGCCGTGGAAGATGATAGACCTGGATTTTCAGAGGAAACTCTTGTGGATTGGGCAAAGCCCTTCCTGAGTGATAGCAGAAGAGTGTTGAGAATTATGGATACAAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGTTTGAACACAGACCCCAAATTTAGACCACCTATGGTAGATGTTCTAGCAGCATTGGAAGGACTTCATTCCTCAAATACAATCACAAGGACACCAAAATCTGAAACTGAGAATCAAACAACCAGGCATTCTGGTCATTCACAAAAGTAA 1149 0.4125 MMGNTCAKPVAHVSSSNFAGSKKPLSKTKQHSNSSEQKAVVQTSKLNIAKSISNNLKSFSLSDLKEATKNFRQDNLIGEGGFGRVFKGWIDENTYAPTKPGSGIVVAIKNLKQESFQGHKEWLAEVSYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPIAWITRVNIAIGVARGLTFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVDVLAALEGLHSSNTITRTPKSETENQTTRHSGHSQK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3445g00004 382 Pfam Protein tyrosine and serine/threonine kinase 74 350 IPR001245 GO:0004672|GO:0006468
Gabi3445g00004 382 SMART serkin_6 71 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3445g00004 382 MobiDBLite consensus disorder prediction 15 39 - -
Gabi3445g00004 382 MobiDBLite consensus disorder prediction 359 382 - -
Gabi3445g00004 382 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Gabi3445g00004 382 SUPERFAMILY Protein kinase-like (PK-like) 47 357 IPR011009 -
Gabi3445g00004 382 PANTHER OS01G0588500 PROTEIN-RELATED 30 356 - -
Gabi3445g00004 382 Gene3D Transferase(Phosphotransferase) domain 1 157 379 - -
Gabi3445g00004 382 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 366 - -
Gabi3445g00004 382 Gene3D Phosphorylase Kinase; domain 1 44 156 - -
Gabi3445g00004 382 FunFam Serine/threonine-protein kinase BIK1 36 156 - -
Gabi3445g00004 382 ProSiteProfiles Protein kinase domain profile. 71 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3445g00004 382 CDD STKc_IRAK 77 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3445g00004 Gabi-Chr3445 80295 85143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3445g00004 22 352 Glycoside Hydrolase AT3G07070 49.401 6.79e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3445g00004 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3445g00004 - - gmx:100800654 643.269