Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3444g00015 ATGTGCGATCCATTCCTCCACCGAGTCTCTTTGTCCAATGCTACCAGCAACTCCTCAAACTCTTCAAAACCCCACAAAACAGAGACCAAAAAACAGAGCAAAACCAAGAGAACCAGAGAGTGCAGCAAGCACCCGGTTTACCACGGGGTGAGAATGCGGAACTGGGGCAAATGGGTGTCAGAAATTCGCGAGCCACGCAAGAAATCACGCATCTGGCTTGGCACTTTTTCCACTCCTGAAATGGCAGCACGAGCACACGATGTTGCAGCTTTGAGCATTAAGGGACACTCTGCGATTCTGAACTTCCCAAAGATAGCTGAGATGCTCCCTAGACCCCTCACGCTTACCCCACGTGACATCCAAGCCGCGGCTGCTGAAGCCGCCGCCATGGTGGAATTCGACCCTCCCACATTAGAAGAAGGGTCAGAGTCTTCAGAGCTGAGCGAGATTGTTGAACTACCTAACATAGAAGAGAGCTTCGACTCGGTGAACTCGAGAACTGAGTTCATATTTTCTGAGATGATGTTTGGGGAACAGAGTTTTATTATAGACTGTGAGTGTGGGATTCCAGTTTGGGATTTATGA 585 0.494 MCDPFLHRVSLSNATSNSSNSSKPHKTETKKQSKTKRTRECSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGHSAILNFPKIAEMLPRPLTLTPRDIQAAAAEAAAMVEFDPPTLEEGSESSELSEIVELPNIEESFDSVNSRTEFIFSEMMFGEQSFIIDCECGIPVWDL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3444g00015 194 MobiDBLite consensus disorder prediction 9 23 - -
Gabi3444g00015 194 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Gabi3444g00015 194 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Gabi3444g00015 194 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Gabi3444g00015 194 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Gabi3444g00015 194 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Gabi3444g00015 194 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Gabi3444g00015 194 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Gabi3444g00015 194 MobiDBLite consensus disorder prediction 8 43 - -
Gabi3444g00015 194 MobiDBLite consensus disorder prediction 24 43 - -
Gabi3444g00015 194 Pfam AP2 domain 45 96 IPR001471 GO:0003700|GO:0006355
Gabi3444g00015 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 159 - -
Gabi3444g00015 194 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3444g00015 Gabi-Chr3444 83439 85982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3444g00015 13 173 AP2-EREBP Transcription Factor Family AT5G11590 54.497 1.55e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3444g00015 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3444g00015 K09286 - gmx:100784419 231.876