Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3444g00010 ATGGCTGGCATAGCATTCGGACGCTTTGATGATTCTTTCAGTTTGGGCTCCATCAAGGCCTATATTGCTGAGTTCATCTCAACATTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGATGCAGCTCTTGATCCTGCTGGTTTGGTAGCAGTTGCTGTTTGCCATGGATTTGCTCTCTTTGTTGCAGTTTCTGTTGGTGCCAACATTTCTGGTGGCCATGTTAACCCAGCTGTGACCTTCGGGTTGGCTATTGGGGGCCAGATCACTATCCTCACTGGTATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTGGCATGCTTGCTCCTCAAGTTTGTCACAGGAGCTTTGACAATTCCTATCCATGGTGTTGCTGCTGGAGTTGGAGTTGGTCAAGGTGTTGTTACTGAAATTATAATCACATTTGGGTTGGTGTACACTGTGTATGCCACAGCAGCTGACCCCAAGAAAGGATCATTGGGAACAATAGCACCAATTGCCATTGGTTTCATTGTTGGTGCAAACATCTTAGCTGCAGGACCATTCTCTGGTGGATCAATGAACCCTGCACGCTCCTTTGGCCCTGCAGTTGTTAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTTATCGGTGGTGGTTTGGCTGGTCTTATCTATGGCTATGTCTTCATGCCCTCTCAGCATGCACCTTTGCCTAGTGATTATTGA 732 0.4713 MAGIAFGRFDDSFSLGSIKAYIAEFISTLIFVFAGVGSAIAYDAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLAIGGQITILTGIFYWIAQLLGSIVACLLLKFVTGALTIPIHGVAAGVGVGQGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYGYVFMPSQHAPLPSDY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3444g00010 243 Pfam Major intrinsic protein 15 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PRINTS Major intrinsic protein family signature 210 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PRINTS Major intrinsic protein family signature 173 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PRINTS Major intrinsic protein family signature 140 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PRINTS Major intrinsic protein family signature 95 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 PANTHER AQUAPORIN-8 4 237 IPR034294 -
Gabi3444g00010 243 SUPERFAMILY Aquaporin-like 13 239 IPR023271 -
Gabi3444g00010 243 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Gabi3444g00010 243 CDD MIP 19 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 FunFam Probable aquaporin TIP1-1 2 243 - -
Gabi3444g00010 243 NCBIfam MIP family channel protein 23 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3444g00010 243 ProSitePatterns MIP family signature. 76 84 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3444g00010 Gabi-Chr3444 64235 65925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3444g00010 1 241 Major Intrinsic Protein MIP AT3G16240 79.757 3.73e-136 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3444g00010 K09873 - qsa:O6P43_018186 407.527