Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3444g00003 ATGTCTAGACCATTAGAGCATGATTACATAGGCTTGGGGCCTGAGAATCCATCAATGGACGGAAGCTCTGAAAAAATATCATCTTCTTCTTCTGCTGCTTCCACTCTCTCCTCTGAGAATGGTAAGACCTCTTCTCTCAACTTCAAGGAGACAGAGCTTAGGCTTGGCTTGCCTGGTTGTGAGTCTCCTGAGAGAAAATCAGGTTATGGGGTGTCTCTTTTTGGCAAGGATTTGCAGAACAAGCATAATGTTTGTTCTGTTGCAAGCCCTTTGAAGAACCTTGTGGCTGGGTCTAAGAGGGGCTTCTCTGATGCTATTGATGGCTCTTCTGGGAAATGGGTTTTCTCTGTGAATGATGGATCTGAGGTTGATTTGGGAAAAGGAGCTCCTTTGTTCTCTCCAAGAGGAGGGAATGTTGGGAAGCCTATTGTTGGTTTGGAGAATCAAACTAACACCCAGCAGGGTAATACCACTTCACCAACCATCAAAGAGGTTAGTGTAGTTCCCCAATCTGCCAAGCCAGGTCAGGAAAAGAATAATCAGGTTGCTCGAACAAATGAGCATGCTAGTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACACAATGGCCTTTAATATGACAAAGAACAGTGATGAAGCTGAGGGAAAACCAGGATTTGGTTGTCTCTATGTAAAGGTAAGTATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCTACAACAACTATGTGGAACTTTCTTCGGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGGCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATATGTTCTTACATATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGTTCACTGACTCATGTAGGAGACTAAGGATTATGAAAGGCTCTGAGGCAATTGGGCTAGGTTGCAGCTCCAAGGGCCATGGAAAAATCTAG 1050 0.4486 MSRPLEHDYIGLGPENPSMDGSSEKISSSSSAASTLSSENGKTSSLNFKETELRLGLPGCESPERKSGYGVSLFGKDLQNKHNVCSVASPLKNLVAGSKRGFSDAIDGSSGKWVFSVNDGSEVDLGKGAPLFSPRGGNVGKPIVGLENQTNTQQGNTTSPTIKEVSVVPQSAKPGQEKNNQVARTNEHASAPAAKAQVVGWPPIRSFRKNTMAFNMTKNSDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYVELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLGCSSKGHGKI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3444g00003 349 ProSiteProfiles PB1 domain profile. 231 333 IPR000270 GO:0005515
Gabi3444g00003 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 46 338 IPR003311 GO:0005634|GO:0006355
Gabi3444g00003 349 MobiDBLite consensus disorder prediction 168 187 - -
Gabi3444g00003 349 MobiDBLite consensus disorder prediction 1 49 - -
Gabi3444g00003 349 Pfam AUX/IAA family 50 340 IPR033389 -
Gabi3444g00003 349 MobiDBLite consensus disorder prediction 20 49 - -
Gabi3444g00003 349 FunFam Auxin-responsive protein 226 343 - -
Gabi3444g00003 349 MobiDBLite consensus disorder prediction 168 195 - -
Gabi3444g00003 349 Gene3D - 228 346 - -
Gabi3444g00003 349 SUPERFAMILY CAD & PB1 domains 231 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3444g00003 Gabi-Chr3444 22448 25138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3444g00003 233 336 B3 DNA Binding Superfamily AT1G19850 33.962 1.75e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3444g00003 AUX_IAA 8.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3444g00003 K14484 - qsa:O6P43_018182 499.204