Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3444g00002 ATGTCTAGACCATTAGAGCATGATTACATAGGCTTGGGGCCTGAGAATCCATCAATGGACGGAAGCTCTGAAAAAATATCATCTTCTTCTTCTGCTGCTTCCACTCTCTCCTCTGAGAATGGTAAGACCTCTTCTCTCAACTTCAAGGAGACAGAGCTTAGGCTTGGCTTGCCTGGTTGTGAGTCTCCTGAGAGAAAATCAGGTTATGGGGTGTCTCTTTTTGGCAAGGATTTGCAGAACAAGCATAATGTTTGTTCTGTTGCAAGCCCTTTGAAGAACCTTGTGGCTGGGTCTAAGAGGGGCTTCTCTGATGCTATTGATGGCTCTTCTGGGAAATGGGTTTTCTCTGTGAATGATGGATCTGAGGTTGATTTGGGAAAAGGAGCTCCTTTGTTCTCTCCAAGAGGAGGGAATGTTGGGAAGCCTATTGTTGGTTTGGAGAATCAAACTAACACCCAGCAGGGTAATACCACTTCACCAACCATCAAAGAGGTTAGTGTAGTTCCCCAATCTGCCAAGCCAGGTCAGGAAAAGAATAATCAGGTTGCTCGAACAAATGAGCATGCTAGTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACACAATGGCCTTTAATATGACAAAGAACAGTGATGAAGCTGAGGGAAAACCAGGATTTGGTTGTCTCTATGTAAAGGTAAGTATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCTACAACAACTATGTGGAACTTTCTTCGGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGGCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATATGTTCTTACATATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGTTCACTGACTCATGTAGGAGACTAAGGATTATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAG 1056 0.4479 MSRPLEHDYIGLGPENPSMDGSSEKISSSSSAASTLSSENGKTSSLNFKETELRLGLPGCESPERKSGYGVSLFGKDLQNKHNVCSVASPLKNLVAGSKRGFSDAIDGSSGKWVFSVNDGSEVDLGKGAPLFSPRGGNVGKPIVGLENQTNTQQGNTTSPTIKEVSVVPQSAKPGQEKNNQVARTNEHASAPAAKAQVVGWPPIRSFRKNTMAFNMTKNSDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYVELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3444g00002 351 ProSiteProfiles PB1 domain profile. 231 333 IPR000270 GO:0005515
Gabi3444g00002 351 MobiDBLite consensus disorder prediction 168 187 - -
Gabi3444g00002 351 MobiDBLite consensus disorder prediction 1 49 - -
Gabi3444g00002 351 MobiDBLite consensus disorder prediction 20 49 - -
Gabi3444g00002 351 Gene3D - 228 344 - -
Gabi3444g00002 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 46 338 IPR003311 GO:0005634|GO:0006355
Gabi3444g00002 351 MobiDBLite consensus disorder prediction 168 195 - -
Gabi3444g00002 351 FunFam Auxin-responsive protein 226 343 - -
Gabi3444g00002 351 SUPERFAMILY CAD & PB1 domains 231 332 - -
Gabi3444g00002 351 Pfam AUX/IAA family 50 342 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3444g00002 Gabi-Chr3444 22446 25138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3444g00002 233 345 B3 DNA Binding Superfamily AT1G19850 32.174 5.25e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3444g00002 AUX_IAA 1.3e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3444g00002 K14484 - qsa:O6P43_018182 516.153