Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3437g00001 ATGGCGGTGGTTGAGGCGAGAAAGGCACCACGGCCAGGTAAGGGAGGGTTCGAGGGTCAAGGTTTAAGCGAGGAGGAAGCGCGTGTGCGAGCCATTGCGGAGATCGTGAGCTCCATGGTCGACCTCTCTCGGAAAGGCCAAAACGTCGATCTCAACGCGCTCAAGTCCGCCGCGTGCCGCAAGTACGGCCTCTCGCGTGCGCCCAAGTTGGTTGAGATGATCGCCGCGCTTCCCGACTCCGACCGGGAGGCTCTGCTTCCCAAGCTACGCGCCAAGCCAGTTCGAACCGCTTCCGGAATCGCCGTCGTCGCCGTCATGTCCAAGCCGCATCGCTGCCCTCACATAGCCACCACCGGTAACATTTGCGTCTACTGCCCCGGTGGTCCTGACTCCGACTTCGAGTACAGTACTCAGTCTTACACTGGTTATGAACCTACTAGCATGCGTGCAATTCGAGCAAGGTATAATCCGTATGTACAAGCAAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTTGATAAGGTTGAGTTCATCTTAATGGGTGGTACTTTCATGTCACTTCCAGCTGATTACCGGGATTATTTTATTAGGAATCTTCATGATGCTTTGTCTGGACACACTTCTGCCAATGTGGAAGAGGCAGTGGCGTACTCTGAGCATAGCGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCGGATTATTGTCTTGGGCCTCACTTACGACAGATGCTTACTTATGGTTGTACTCGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGTGACACTAATAGAGGACATACCGTAGCTGCTGTGGCTGATTGTTTTTGCTTGGCAAAAGATGCTGGTTTCAAGGTTGTCGCTCACATGATGCCTGATCTTCCCAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGCCTTAAAATATATCCTACTCTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACAGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCCCCGTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTTGTTACATCTGGGGTTGAGAAAGGGAACCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTAAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATAAAGCCAGAAGAGGTGGAGCTTGTTCGTCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTGTCTTATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGACTGCGAAAATGTGGCCGGAACACTGCTTGTCCGGAGCTTATGGGGAAGAGTTCTATTGTTCGTGAGCTCCACGTTTATGGAACTGCTGTACCAGTTCATGGGCGGGATGCCGAGAAGCTACAACACCAGGGTTATGGTACGCTTCTAATGGAGGAGGCAGAGCGTATTGCGTGCACAGAACATAGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACGCGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGGCCTTACATGGTGAAATATCTAGTGTAA 1683 0.4955 MAVVEARKAPRPGKGGFEGQGLSEEEARVRAIAEIVSSMVDLSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDSDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLTYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTACPELMGKSSIVRELHVYGTAVPVHGRDAEKLQHQGYGTLLMEEAERIACTEHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3437g00001 560 Gene3D - 411 560 - -
Gabi3437g00001 560 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3437g00001 560 PIRSF HAT_Elp3 18 560 IPR034687 -
Gabi3437g00001 560 Pfam Acetyltransferase (GNAT) family 412 548 IPR000182 GO:0016747
Gabi3437g00001 560 ProSiteProfiles Radical SAM core domain profile. 95 385 IPR007197 GO:0003824|GO:0051536
Gabi3437g00001 560 CDD Radical_SAM 109 356 - -
Gabi3437g00001 560 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 409 560 IPR000182 GO:0016747
Gabi3437g00001 560 FunFam Elongator complex protein 3 408 560 - -
Gabi3437g00001 560 Pfam Radical_SAM C-terminal domain 326 405 IPR032432 -
Gabi3437g00001 560 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 18 559 IPR039661 -
Gabi3437g00001 560 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 368 555 IPR016181 -
Gabi3437g00001 560 SFLD elongater protein-like 50 559 - -
Gabi3437g00001 560 SFLD ELP3-like 50 559 IPR034687 -
Gabi3437g00001 560 SMART MiaB 102 364 IPR006638 GO:0003824|GO:0051536
Gabi3437g00001 560 Pfam Radical SAM superfamily 120 308 IPR007197 GO:0003824|GO:0051536
Gabi3437g00001 560 SUPERFAMILY Radical SAM enzymes 132 371 - -
Gabi3437g00001 560 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 47 559 IPR034687 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gabi3437g00001 Radical_SAM 4e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3437g00001 K07739 - gmx:100818764 1099.73