Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3434g00003 ATGGAGGAAAATCTACCTCCAGGTTTCAGGTTCCATCCTACAGATGAAGAGCTTATCACATATTATCTTTCAAGGAAAGTGTCTGATACTGACTTCATATCCAAAGCTATAGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAAAGCCTCGATGGGGGAGAAGGAATGGTATTTCTTCAACTTGAGAGACCGCAAGTATCCAACTGGACTTCGAACAAACCGAGCCACCGAATCAGGGTACTGGAAAACCACAGGGAAAGACAAGGAAATTTTTCGTGCTGGGGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTCTATAAGGGTAGAGCTCCACGTGGTGAGAAAAGCAATTGGGTCATGCACGAGTATAGACTAGAAAACAAGCATCACTTTAGATCTTCAAAGGACGAATGGGTGGTTTGTAGGGTTTTTCAAAAGAGCTTAGCAGCAAAAAAACCACAACAAACATCATCCTCCCAACCAGAGTCCCCATGTGACACAACCTCAATGGTCAATGAATTTGGTGATGTTGAGCTGCCAAATCTAAACAACATTGCAAATTCATCATGTGGACTAACTAACATTTCAGGACAAACTTACAATAATGTTAACACAAATATGAACTTGGCAATGAATTGGCCAGTTGCAAGTGAGGTTCCTTCTCTTCCATCTCTCCCATGGCCTTCTGGGTTGTTGAATCCAAATATTTCTGTGAATTCTTTGCTTCTCAAGGCATTACAACTTAGGAGTTACCAACAAAGAGAAGCTGCAGCTACAGATCATTTAGCATCATTTATGCCTCAAGGAGTAGTTTCCCACGTTGGAAATGATCACCTAAGTTCAAATCTCAGTGCTGATTCTTCAAAAGTTTTAGAATGTATGCCACAACAACAGCAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 948 0.4156 MEENLPPGFRFHPTDEELITYYLSRKVSDTDFISKAIAVVDLNKSEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRSSKDEWVVCRVFQKSLAAKKPQQTSSSQPESPCDTTSMVNEFGDVELPNLNNIANSSCGLTNISGQTYNNVNTNMNLAMNWPVASEVPSLPSLPWPSGLLNPNISVNSLLLKALQLRSYQQREAAATDHLASFMPQGVVSHVGNDHLSSNLSADSSKVLECMPQQQQQEQPFNLDSIW 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3434g00003 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 239 - -
Gabi3434g00003 315 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Gabi3434g00003 315 FunFam NAC domain-containing protein 100-like 14 155 - -
Gabi3434g00003 315 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Gabi3434g00003 315 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gabi3434g00003 315 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3434g00003 Gabi-Chr3434 44309 47012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3434g00003 1 315 NAC Transcription Factor Family AT3G18400 58.383 1.09e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3434g00003 NAM 7.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3434g00003 - - gmx:100787111 509.22