Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3432g00006 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCAACTGTGATTTGTTGTGCGGACGAGGCTGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGTAAGCACCAGAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGATATATGTCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGAATTGTGATGAACCAATTCATTCACCTGGCAGCATTTCCGCGAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCCTTGAGTTCTAATTGCGCCAAGGACAATGAAAAAAGTCACTTGGAGCCACCAAAGAGGAATGCACAAGAAGTTTCTGTTGAAACTCCTTCTCAGCAAGTGCCAAGCTTCACGTCCTCTTGGGCTGTTGATGACTTATTGGAATTGACAGGCTTTGAATCACCTGACAAAAAGGAATCCCTGCAATTTGGAGAGCTGGAATGGATGGCAGATGTGGGTCTTTTTGGTGAACAATTTACTCAGGAAGCCTTGGCTGCAGCTGAAGTCCCTCAGCTTCCAGTAACTCATCCTAGCAGCAATGTTGCCTCCTATAGAACCTCCAAGTCCTACATGTCTCACAAAAAGCCTAGGATTGAAGAAGTTGAAGATGAGGATGATGAGTATTTCACTGTGCCTGATCTTGGTTGA 720 0.4486 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCQNCDEPIHSPGSISANHQRFLATGIRVALSSNCAKDNEKSHLEPPKRNAQEVSVETPSQQVPSFTSSWAVDDLLELTGFESPDKKESLQFGELEWMADVGLFGEQFTQEALAAAEVPQLPVTHPSSNVASYRTSKSYMSHKKPRIEEVEDEDDEYFTVPDLG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3432g00006 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi3432g00006 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gabi3432g00006 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gabi3432g00006 239 CDD Bbox1_BBX-like 5 47 - -
Gabi3432g00006 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gabi3432g00006 239 MobiDBLite consensus disorder prediction 199 239 - -
Gabi3432g00006 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gabi3432g00006 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Gabi3432g00006 239 MobiDBLite consensus disorder prediction 114 136 - -
Gabi3432g00006 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Gabi3432g00006 239 MobiDBLite consensus disorder prediction 199 213 - -
Gabi3432g00006 239 CDD Bbox1_BBX-like 57 98 - -
Gabi3432g00006 239 Gene3D Classic Zinc Finger 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3432g00006 Gabi-Chr3432 32363 35156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3432g00006 1 161 Orphan Transcription Factor Family AT1G06040 62.353 1.01e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gabi3432g00006 zf-B_box 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3432g00006 - - gmx:100814727 445.277