Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3428g00046 ATGACTCCTGTTTCTCTGAACCCTCCAGGTCCTTCCATAGGTCAAAACCAACTCTTCATTTCCCCTAATAATCAGGACTGCCGTTTCTTATTTAACACACTTGATCAAAGTCAAAGCATAGAAATTGGACGGTTAAGAGAAAATTATCATCAGGATATTGATAAACTGGTATTGCATGATGATGGATCATCATCAAGCAATCATCAACTTTGCAATTCAATATCATGTGACCGTAATTTATCCTCGCACAAAATGGAGGAAGAAGATAGCAAAAATGGTCACGGGTGTGCAAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGACCAAGTAGCAGTGCAGCGACTGACAAAGCCATCAATACTACTACTACTTCTACTACTACTACTATTACTACTACAAGTCCAAGATTCCAAAATGAAGGGCACCAAAACAGGTACAGCCAAAGAAGCCCTCGTAATAACAGCACTACCACAACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCATGTGGCATTAGACAGAGGAAGTTAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTGGCTAAGCCCGTAAATGCACCATCCACAAAGACCAGAGTGCATAACAAGGAAAAGAAGTATCGTAAAAATCATTTTGCTCAGTTGAAGAATAAGTACAAGACCACCAGAACTAGTGCTGCAGGGTCATCTCAGGGGGTACGGAAGCTTGAATGTTTCAAGGACTTGGCAATAAGTTTGAGTAATAACTTGGCTTTTCATGAGCAAGTGTTTCCACGGGATGAAGTAGCTGAGGCGGCGCTGCTTCTGATGGATTTATCTTGTGGTTTTCACTTTTGA 903 0.4175 MTPVSLNPPGPSIGQNQLFISPNNQDCRFLFNTLDQSQSIEIGRLRENYHQDIDKLVLHDDGSSSSNHQLCNSISCDRNLSSHKMEEEDSKNGHGCAKWMSSKMRLMKKMMRPSSSAATDKAINTTTTSTTTTITTTSPRFQNEGHQNRYSQRSPRNNSTTTTRVCSDCNTSSTPLWRSGPKGPKSLCNACGIRQRKLRRAMAEAANGLAKPVNAPSTKTRVHNKEKKYRKNHFAQLKNKYKTTRTSAAGSSQGVRKLECFKDLAISLSNNLAFHEQVFPRDEVAEAALLLMDLSCGFHF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3428g00046 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 200 - -
Gabi3428g00046 300 Gene3D - 160 246 IPR013088 GO:0006355|GO:0008270
Gabi3428g00046 300 MobiDBLite consensus disorder prediction 114 183 - -
Gabi3428g00046 300 Pfam GATA zinc finger 166 199 IPR000679 GO:0006355|GO:0043565
Gabi3428g00046 300 SMART GATA_3 160 211 IPR000679 GO:0006355|GO:0043565
Gabi3428g00046 300 CDD ZnF_GATA 165 202 IPR000679 GO:0006355|GO:0043565
Gabi3428g00046 300 ProSitePatterns GATA-type zinc finger domain. 166 191 IPR000679 GO:0006355|GO:0043565
Gabi3428g00046 300 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 61 298 - -
Gabi3428g00046 300 MobiDBLite consensus disorder prediction 117 179 - -
Gabi3428g00046 300 ProSiteProfiles GATA-type zinc finger domain profile. 160 196 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3428g00046 Gabi-Chr3428 527640 530051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3428g00046 93 298 C2C2-Gata Transcription Factor Family AT4G26150 38.326 5.37e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3428g00046 GATA 4.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3428g00046 - - gmx:100780326 331.257