Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3428g00038 ATGCCAAAAATGAAGCATCTACTCAGAAAGCTTCACATCGGTGGTGGCGCTGCTACAATCAATCACAATCACATATTGCCTCACGCTGATCCTCTCACACACACTCCTCCTTCTTCTTCTTCCTCTCTTCCCTCGCCGTCTACTCCAACCGTCGTCGTTTCGGATCCGAACCCTGTCGTTGAGTCGGAAAACGACAACGGTAGCACCAACGAGGGTGTCGTTGATTTCAATCTGTTGCAGGAAGAAGAGTTTCAGATGCAGTTGGCTCTGGCAATCAGCGCTTCTGATCCCGATCTCCACGAACTAGCTGAATCTGCACAGATCGATGCCGCCAAACAGATGAGCCTCGGTTATTCTGCTTCTCTCACTGACACCAAAGCCCTTGTTCAGTTTCAATCCCTTCGTTATAGGAACTACAATGTCATTGCTTATGATGAGAAAGTGATGGATGGATTTTATGATGTTTATGGGATTACCTCCAATTTGATTGAACGAGGAAAGATGCCGTTGTTGGTGGATCTGCAAACTACGCCTGTCTCAGGGAATGTTGATTGTGAAGTGATTTTGGTGAACCGTGTAGTGGATATGGAACTGAATCTGCTGGAGAAAAAAGCATGTGCTTTGTTCAATGAGTGTTCTGTTTCTGAACTAGGACTAATGTTGAGTGGCTTACTTCAGAAACTTGCTGATATTGTTGTTAATAGAATGGGTGGACCAGTTGGTAATGCTGAAAAAATCACCAAAAGGTGGGCTATGAGGAGTCGTGAATTACGAGATTCTTTAAGAACCACTGTCCTTCCCCTTGGCTGTCTCGATGTTGGACTTTCGCGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAATATTCCCTGCATGCTAGTAAAAGGGAGCTATTACACAGGAACTGACGATGGGGCTGTGAATTTGATTAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCCGGCATTCTTATTCCTGCTGAGGTACCCAGCAGTCAACTCCAAAACTACGGTTTTGCTGTTAGGGGTTGTGCAGAGATTGTAGGACTACCTAACAACACGCATGCGATGCTTGATGATGCAACTGGTGTGCCGGGAGTCTTGTCTGATTATGGTAGAATTTCAACAATGGGGATGGTCCAGACAGAAGAACTATTAGATATGGGCAGTCAAACAAAACCAGATGAAATAAATTATGTTGATGTGAATGAAACAGCGAGATTTAAACATACAGAGGCATATGAATGCTCATCACATACAGAACCATCACCTGCAGAAATGATGCATGTAAAAGATGTCTCTGAGTATGTTCTCAGTGCAACTAAGCACCCAGAATTTGCTCAAAAACTGCACACTGTTCTAGTAGAGAGTGGAGCATTACCTCCTCCTGATCTATTTTCAGATATGAATCCCCGAGATAGGGGTGTAGATAAAGCAAATGAAATTTTTTTTGTTGATACTGTTCAAGCTGACCCAAATAGGTTGTTACTAAACTATAAGAAGTCTCTCAAGCCCTCTCAAGGGGTGGGCTCTGGGAGCGATACTAGGTTGTGTCAATCTGCTGACCAGTTAGCTGAACAGCGAAAAGAATTTCATACAGATGCCATTAGTTTTTGTAATTCTTCACAGAGTGATAATACAAGGAATTGGTTTGTAACTGTTTCTGATAGAGATGATGGTTTAGAGCAATCTAATGACATTGAATTGGAGAAAGATTCAGCAATTCAAATAAATGAGACAGTCAATGGAGATTGTAACCTATTTGATGGTAAAAGCAAGGAAGTAAACCCAGTACTTGGTGAAGGCACAGAATGGGAAATTCAATGGGAGGATCTTCGTATTGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTATCATGCTGATTGCAATGGCACTGAAGTTGCTGTGAAGAAGTTTCTAAACCAAGATTTCTCTGGTGATGCACTAGCTCAGTTCAAGTCTGAAATTGAGATCATGTTAAGAATGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATAACTCGTGCCCCACACTTCTCTATTTTGACAGAGTTTCTTCCAAGAGGCAGCTTATATAGGCTGTTGCATCGTCCCAATCTTCGACTTGATGAGAAGAGGCGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACAAGCCATCCTCCCATTGTCCATCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAAGCATTGGGTTGTTAAGGTCTGTGATTTTGGTATGTCACGGATGAAGCACCATACTTTTTTGTCATCAAAGTCTTGTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTCTTAAGAAATGAGCCAGCTAATGAGAAGTGCGATGTTTATAGTTTTGGTGTGATCTTGTGGGAATTGACTACTATAAGAATCCCATGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGGCTTGAAATTCCAGAAGATGTTGATCCAGTAGTTGCACAAATAATACGTGATTGCTGGCAAATGGAGCCACACTTGCGGCCATCATTCTCACAGCTAATGTCTCGTCTCAGTCGTCTTCAAAATCTGGTTCTCCCAAAAACGAGCTCAACAGATTAA 2664 0.4264 MPKMKHLLRKLHIGGGAATINHNHILPHADPLTHTPPSSSSSLPSPSTPTVVVSDPNPVVESENDNGSTNEGVVDFNLLQEEEFQMQLALAISASDPDLHELAESAQIDAAKQMSLGYSASLTDTKALVQFQSLRYRNYNVIAYDEKVMDGFYDVYGITSNLIERGKMPLLVDLQTTPVSGNVDCEVILVNRVVDMELNLLEKKACALFNECSVSELGLMLSGLLQKLADIVVNRMGGPVGNAEKITKRWAMRSRELRDSLRTTVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGILIPAEVPSSQLQNYGFAVRGCAEIVGLPNNTHAMLDDATGVPGVLSDYGRISTMGMVQTEELLDMGSQTKPDEINYVDVNETARFKHTEAYECSSHTEPSPAEMMHVKDVSEYVLSATKHPEFAQKLHTVLVESGALPPPDLFSDMNPRDRGVDKANEIFFVDTVQADPNRLLLNYKKSLKPSQGVGSGSDTRLCQSADQLAEQRKEFHTDAISFCNSSQSDNTRNWFVTVSDRDDGLEQSNDIELEKDSAIQINETVNGDCNLFDGKSKEVNPVLGEGTEWEIQWEDLRIGERIGIGSYGEVYHADCNGTEVAVKKFLNQDFSGDALAQFKSEIEIMLRMRHPNVVLFMGAITRAPHFSILTEFLPRGSLYRLLHRPNLRLDEKRRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDKHWVVKVCDFGMSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTIRIPWKGLNPMQVVGAVGFQNKRLEIPEDVDPVVAQIIRDCWQMEPHLRPSFSQLMSRLSRLQNLVLPKTSSTD 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3428g00038 887 Gene3D Phosphorylase Kinase; domain 1 613 697 - -
Gabi3428g00038 887 FunFam Serine/threonine-protein kinase CTR1 699 882 - -
Gabi3428g00038 887 MobiDBLite consensus disorder prediction 26 71 - -
Gabi3428g00038 887 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Gabi3428g00038 887 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 151 878 - -
Gabi3428g00038 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Gabi3428g00038 887 Pfam Protein tyrosine and serine/threonine kinase 620 872 IPR001245 GO:0004672|GO:0006468
Gabi3428g00038 887 PRINTS Tyrosine kinase catalytic domain signature 780 790 IPR001245 GO:0004672|GO:0006468
Gabi3428g00038 887 PRINTS Tyrosine kinase catalytic domain signature 799 821 IPR001245 GO:0004672|GO:0006468
Gabi3428g00038 887 PRINTS Tyrosine kinase catalytic domain signature 843 865 IPR001245 GO:0004672|GO:0006468
Gabi3428g00038 887 PRINTS Tyrosine kinase catalytic domain signature 733 751 IPR001245 GO:0004672|GO:0006468
Gabi3428g00038 887 PRINTS Tyrosine kinase catalytic domain signature 694 707 IPR001245 GO:0004672|GO:0006468
Gabi3428g00038 887 FunFam Serine/threonine-protein kinase isoform 1 611 698 - -
Gabi3428g00038 887 CDD STKc_MAP3K-like 626 872 - -
Gabi3428g00038 887 MobiDBLite consensus disorder prediction 33 71 - -
Gabi3428g00038 887 SMART serkin_6 620 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3428g00038 887 ProSiteProfiles Protein kinase domain profile. 620 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3428g00038 887 Gene3D Transferase(Phosphotransferase) domain 1 699 883 - -
Gabi3428g00038 887 Pfam Ethylene-responsive protein kinase Le-CTR1 130 333 - -
Gabi3428g00038 887 SUPERFAMILY Protein kinase-like (PK-like) 609 871 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3428g00038 Gabi-Chr3428 455150 466113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3428g00038 1 886 MAP Kinase Kinase Kinase AT5G11850 55.591 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi3428g00038 PK_Tyr_Ser-Thr 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3428g00038 K04424 - gmx:100779137 1325.84